| Helicobacter pylori 26695 |
| Helicobacter pylori J99 |
List of IS605
copies, IRs ,
transposase alignmentList of IS606 copies
Contributor : TIGR
|
List of IS605
copies, IRs ,
transposase alignment |
|||||
| List of IS606 copies |
IS name |
orf name |
Simililarity DNA |
Similarity AA |
Family |
orf L end |
orf R end |
orf bp |
# aas |
(1) |
(2) | ISLend |
ISRend |
Length |
DR |
IR |
IS coordinates present |
Length |
Comments |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
IS605-P |
IS605(92%) |
IS605 |
c |
23140(10)-23102(47) |
39 |
|||||||||||||
IS606-P |
IS606(86%) |
IS605 |
86505 |
86391(1854)-86505(1968) |
115 |
|||||||||||||
IS605-P |
IS605(87%) |
IS605 |
141586(24)-141625(63) |
40 |
||||||||||||||
IS605-P |
IS605(96%) |
IS605 |
170180(1871)-170204(1895) |
25 |
||||||||||||||
IS605-P |
IS605(100%) |
IS605 |
c |
170681(8)-170662(27) |
20 |
|||||||||||||
IS605-P |
IS605(100%) |
IS605 |
200182(9)-200195(22) |
14 |
||||||||||||||
IS605-P |
IS605(100%) |
IS605 |
269975(1)-269990(16) |
16 |
||||||||||||||
IS606A |
IS606(96%) |
c |
425455 |
1973 |
0 |
5/8 |
425819(1604)-425455(1968) |
365 |
||||||||||
HP0413 |
IS606(98%) |
PS3IS like |
426838 |
426032 |
807 |
268 |
c |
426039(1385)-425866(1557) |
174 |
|||||||||
HP0414 |
IS606(90%) |
IS200 |
426876 |
427292 |
417 |
138 |
427427 |
427427(1)-426090(1333) |
1339 |
|||||||||
IS605A |
HP0437 |
IS605(94%) |
IS605 TnpA(99%) |
IS605 |
454758 |
454330 |
429 |
142 |
c |
454235 |
1893 |
0 |
0 |
454235(9)-456127(1903) |
||||
HP0438 |
IS605 TnpB(95%) |
454828 |
456111 |
1284 |
427 |
456127 |
||||||||||||
IS605-P |
IS605(87%) |
IS605 |
c |
466733(24)-466693(64) |
41 |
|||||||||||||
IS606-P |
IS606(100%) |
c |
583508 |
583525(1950)-583508(1967) |
18 |
|||||||||||||
IS606-P |
IS606(92%) |
c |
593763 |
593878(1854)-593763(1968) |
116 |
|||||||||||||
IS606-P |
IS606(85%) |
c |
593968 |
593968(1)-593907(62) |
63 |
|||||||||||||
IS605-P |
IS605(100%) |
IS605 |
968564(9)-968587(37) |
24 |
||||||||||||||
IS605-P |
IS605(91%) |
IS605 |
968899(9)-968954(63) |
56 |
||||||||||||||
IS605B |
HP0988 |
IS605(94%) |
IS605 TnpA(99%) |
IS605 |
1051480 |
1051052 |
429 |
142 |
c |
1050959 |
1892 |
0 |
0 |
1050959(11)-1052850(1904) |
||||
HP0989 |
IS605 TnpB(95%) |
1051550 |
1052833 |
1284 |
427 |
1052850 |
||||||||||||
IS605C |
HP0997 |
IS605(94%) |
IS605 TnpB(95%) |
IS605 |
1061607 |
1060324 |
1284 |
427 |
c |
1060307 |
1893 |
0 |
0 |
1062199(10)-1060307(1904) |
||||
HP0998 |
IS605 TnpA(99%) |
1061677 |
1062105 |
429 |
142 |
1062199 |
||||||||||||
IS606B |
IS606(96%) |
c |
1068547 |
1972 |
0 |
5/8 |
1068911(1604)-1068547(1968) |
365 |
||||||||||
HP1007 |
IS606(99%) |
PS3IS like |
1069929 |
1068602 |
1328 |
441,7 |
c |
1069137(1378)-1068958(1557) |
180 |
Authentic frameshift. | ||||||||
HP1008 |
IS606(90%) |
IS200 |
1069967 |
1070383 |
417 |
138 |
1070518 |
1070518(1)-1069182(1333) |
1338 |
|||||||||
IS605D |
HP1095 |
IS605(94%) |
IS605 TnpB(95%) |
IS605 |
1158007 |
1156724 |
1284 |
427 |
c |
1156709 |
1890 |
2 |
0 |
1158598(11)-1156709(1902) |
||||
HP1096 |
IS605 TnpA(99%) |
1158077 |
1158505 |
429 |
142 |
1158598 |
||||||||||||
IS605-P |
IS605(91%) |
IS605 |
1234195(19)-1234229(53) |
35 |
||||||||||||||
IS605-P |
IS605(94%) |
IS605 |
c |
1524735(8)-1524698(45) |
38 |
|||||||||||||
IS605E |
HP1534 |
IS605(94%) |
IS605 TnpB(95%) |
IS605 |
1614284 |
1613001 |
1284 |
427 |
c |
1612984 |
1894 |
0 |
0 |
1614877(9)-1612984(1904) |
||||
HP1535 |
IS605 TnpA(99%) |
1614354 |
1614782 |
429 |
142 |
1614877 |
| Bold is for complete copies of an IS Italic is for partial copies of an IS |
(1)"c" is for complementary strand (2)"t" is for transposase |