Deinococcus radiodurans, chromosome 1

Source : TIGR

Chromosome 1

Chromosome 2

Megaplasmid MP1

Plasmid CP1

List of IS2621 copies, IRs , transposase alignment List of ISDra3 copies, IRs

List of ISDra1 copies, IRs , transposase alignment List of ISDra4 copies, IRs

List of ISDra2 copies, IRs , transposase alignment List of ISDra5 copies

List of ISDra6 copies, IRs

IS name

orf name

Simililarity DNA

Similarity AA

Family

orf L end

orf R end

orf bp

# aas

(1)
(2)
ISLend

ISRend

Length

DR

IR

IS coordinates present

Length

Comments

IS2621A

DR0010

IS2621(89%)

IS2621(94%)

IS4

10413

11663

1251

416

t

10359

11680

1322

0

19

1322
Mutations at positions 1-3 MNT-->VKS, 46 V-->A, 69 P-->D, 145 F-->L, 153 R-->L, 165 deletion of A, 180 P-->Q, 197 S-->P, 213 F-->L, 220-221 KY-->ND, 234 P-->K, 254-256 ETS-->ARP, 338 P-->Q, 363 E-->G and 390 K-->N.
Point mutation at position 400 causing a premature stop.

ISDra1A

DR0141

IS4

139792

140624

833

277

t

139706

140911

1206

0

21/23

Two frameshifts at positions (aa) 196 and 272.

ISDra1-P

ISDra1A(89%)

IS4

143707

143735

143707(53)-143735(81)

29

ISDra1B

DR0144

ISDra1A(94%)

IS4

143571

142588

984

327

c

t

143795

142585

1207

0
21/25

IS2621-P

IS2621(96%)

IS4

146624(1)-146400(25)

25

ISDra2A

DR0177

ISDra2B(84%)

ISDra2B(88%)

IS605

178048

178443

396

131

t

177932

179666

1735

0

0

177932(10)-178005(83)
178045(123)-178308(386)
178339(417)-178548(626)
178694(772)-179038(1116
179062(1137)-179666(1741)

End of the transposase (10 to 140), mutations at positions 27-28 CV-->AT, 37 G-->D, 52 A-->T, 60 T-->A, 73 S-->G, 78-79 QA-->HV, 98 V-->S, 102 Q-->h, 106-107 KL-->PH and 138-139 DK-->AA.

DR0178

ISDra2B(91%)

178430

179659

1230

409

t

Many mutations.

ISDra3A

DR0255

DR2425(75%)

IS630

253994

252983

1012

336

c

t

254039

252969

1071

0

14

No translation available. Authentic frameshift

ISDra2B

DR0666

IS605

676159

674933

1227

408

c

t

676666

674926

1741

0

6/8

DR0667

676568

676146

423

140

c

t

IS2621B

DR0870

IS2621(100%)

IS2621(100%)

IS4

882723

881473

1251

416

c

t

882777

881456

1322

6

19

1322

IS2621-P

IS2621(96%)

IS4

935124(1)-935148(25)

25

ISDra2C

DR0978

ISDra2B(100%)

ISDra2B(100%)

IS605

995986

994760

1227

408

c

t

996493

994753

1741

0

6/8

DR0979

ISDra2B(100%)

996395

995973

423

140

c

t

ISDra1C

DR1196

ISDra1A(94%)

ISDra1B(98%)

IS4

1205653

1204787

867

288

c

t

1205992

1204786

1207

9

23/24

End of the transposase (41 to 327), mutations at positions 115 W-->L, 193 T-->V, 310 F-->L and 313 A-->P.

Our translation

ISDra1B(98%)

1205770

1204787

984

327
Mutation at position 40 R-->M, 115 W-->L, 193 T-->V, 310 F-->L and 313 A-->P.

DR1284

IS2621(56%)

1291027

1291446

420

140

420
First part of the transposase (58 to 178).

DR1285

IS2621(96%)

IS2621(61%)

IS4

1291465

1292172

708

236

t

1292159(1)-1292177(19)

708
End of the transposase (187 to 416), many mutations.

ISDra5A

DR1296

ISDra5B(100%)

IS5

1302793

1303605

813

270

t

1302704

1303614

911

2

17/19

IS2621C

DR1334

IS2621(100%)

IS2621(100%)

IS4

1339161

1337911

1251

416

c

t

1339215

1337894

1322

7

19

1322

ISDra2D

DR1381

ISDra2B(100%)

ISDra2B(100%)

IS605

1388871

1387645

1227

408

c

t

1389378

1387638
1741
0

6/8

DR1382

ISDra2B(100%)

1389280

1388858

423

140

c

t

ISDra4A

DR1453

IS630

1455962

1456970

1009

335

t

1455920

1456971

1048

0

19/25
No translation available. Authentic frameshift

ISDra6A

DR1523

IS1741(54%)

IS630

1538228

1539092

865

287

t

1538035

1539106

1072

0

20/21
No translation available. Authentic frameshift

ISDra2E

DR1592

ISDra2B(99%)

ISDra2B(100%)

IS605

1611698

1612120

423

140

t

1611600

1613340

1741

0

6/8
Position 693 (DNA) G to S (?), mutation (aa) at position 181 P-->X.

DR1593

ISDra2B(99%)

1612107

1613333

1227

408

t

IS2621D

DR1618

IS2621(100%)

IS2621(100%)

IS4

1638183

1639433

1251

416

t

1638129

1639450

1322

6

19

1322

ISDra2F

DR1651

ISDra2B(100%)

ISDra2B(100%)

IS605

1676198

1674972

1227

408

c

t

1676705

1674965

1741

0

6/8

DR1652

ISDra2B(100%)

1676607

1676185

423

140

c

t

IS2621E'

IS2621(91%)

1788707

0

19

1788707(1)-1789167(461)

461

Disrupted.

ISDra4B

DR1761

ISDra4A (98%)

IS630

1790174

1789166

1009

335

c

t

1790213

1789166

1048

0

18/25
No translation available. Authentic frameshift

IS2621E''

DR1762

IS2621(87%)

IS2621(92%)

IS4

1790239

1791057

819

273

t

1791074

0

19

1790215(463)-1791074(1322)

860
End of the transposase (146 to 416), mutation at positions 153 R-->L, 180 P-->Q, 197 S-->P, 213 F-->L, 220-221 KY-->ND, 234 P-->K, 254-256 ETS-->ARP, 338 P-->Q, 363 E-->G and 390 K-->N.
Mutation causing a premature stop at position 400 of the transposase.

DR1927

ISDra2B(55%)

IS200

1948952

1948515

438

145

c

t
Part of the transposase (9 to 134), many mutations.

ISDra2G

DR1932

ISDra2B(100%)

ISDra2B(100%)

IS605

1953297

1953719

423

140

t

1953199

1954939

1741

0

6/8

DR1933

ISDra2B(100%)

1953706

1954932

1227

408

t

IS2621-P

IS2621(96%)

c

1973142(1)-1973118(25)

25

ISDra4C

DR2028

ISDra4A (98%)

IS630

2044236

2043228

1009

335

c

t

2044276

2043228

1048

0

19/25

No translation available. Authentic frameshift

IS2621F

DR2222

IS2621 (100%)

IS2621(100%)

IS4

2220156

2218906

1251

416

c

t

2220210

2218889

1322

5

19
1322

ISDra2H

DR2323

ISDra2B(100%)

ISDra2B(100%)

IS605

2321524

2321946

423

140

t

2321426

2323166

1741

0

6/8

DR2324

ISDra2B(100%)

2321933

2323159

1227

408

t

DR2424

2428543

2427408

c

t
No translation available. Authentic frameshift

ISDra4D

DR2425

ISDra4A (98%)

IS630

2429191

2428583

609

202

c

t

2429631

2428584

1048

0

18/25

IS2621-P

91% identity with IS2621

IS4

c

2491687(1)-2491663(25)

25

IS name	orf name	Simililarity DNA	Similarity AA	Family	orf L end	orf R end	orf bp	# aas	(1)	(2)	ISLend	ISRend	Length	DR	IR	IS coordinates present	Length	Comments
IS2621A	DR0010	IS2621(89%)	IS2621(94%)	IS4	10413	11663	1251	416		t	10359	11680	1322	0	19		1322	Mutations at positions 1-3 MNT-->VKS, 46 V-->A, 69 P-->D, 145 F-->L, 153 R-->L, 165 deletion of A, 180 P-->Q, 197 S-->P, 213 F-->L, 220-221 KY-->ND, 234 P-->K, 254-256 ETS-->ARP, 338 P-->Q, 363 E-->G and 390 K-->N. Point mutation at position 400 causing a premature stop.
ISDra1A	DR0141			IS4	139792	140624	833	277		t	139706	140911	1206	0	21/23			Two frameshifts at positions (aa) 196 and 272.
ISDra1-P		ISDra1A(89%)		IS4							143707	143735				143707(53)-143735(81)	29
ISDra1B	DR0144	ISDra1A(94%)		IS4	143571	142588	984	327	c	t	143795	142585	1207	0	21/25
IS2621-P		IS2621(96%)		IS4												146624(1)-146400(25)	25
ISDra2A	DR0177	ISDra2B(84%)	ISDra2B(88%)	IS605	178048	178443	396	131		t	177932	179666	1735	0	0	177932(10)-178005(83) 178045(123)-178308(386) 178339(417)-178548(626) 178694(772)-179038(1116 179062(1137)-179666(1741)		End of the transposase (10 to 140), mutations at positions 27-28 CV-->AT, 37 G-->D, 52 A-->T, 60 T-->A, 73 S-->G, 78-79 QA-->HV, 98 V-->S, 102 Q-->h, 106-107 KL-->PH and 138-139 DK-->AA.
DR0178		ISDra2B(91%)	178430	179659	1230	409		t					Many mutations.
ISDra3A	DR0255		DR2425(75%)	IS630	253994	252983	1012	336	c	t	254039	252969	1071	0	14			No translation available. Authentic frameshift
ISDra2B	DR0666			IS605	676159	674933	1227	408	c	t	676666	674926	1741	0	6/8
DR0667			676568	676146	423	140	c	t
IS2621B	DR0870	IS2621(100%)	IS2621(100%)	IS4	882723	881473	1251	416	c	t	882777	881456	1322	6	19		1322
IS2621-P		IS2621(96%)		IS4												935124(1)-935148(25)	25
ISDra2C	DR0978	ISDra2B(100%)	ISDra2B(100%)	IS605	995986	994760	1227	408	c	t	996493	994753	1741	0	6/8
DR0979		ISDra2B(100%)	996395	995973	423	140	c	t
ISDra1C	DR1196	ISDra1A(94%)	ISDra1B(98%)	IS4	1205653	1204787	867	288	c	t	1205992	1204786	1207	9	23/24			End of the transposase (41 to 327), mutations at positions 115 W-->L, 193 T-->V, 310 F-->L and 313 A-->P.
Our translation	ISDra1B(98%)	1205770	1204787	984	327								Mutation at position 40 R-->M, 115 W-->L, 193 T-->V, 310 F-->L and 313 A-->P.
	DR1284		IS2621(56%)		1291027	1291446	420	140									420	First part of the transposase (58 to 178).
DR1285	IS2621(96%)	IS2621(61%)	IS4	1291465	1292172	708	236		t						1292159(1)-1292177(19)	708	End of the transposase (187 to 416), many mutations.
ISDra5A	DR1296		ISDra5B(100%)	IS5	1302793	1303605	813	270		t	1302704	1303614	911	2	17/19
IS2621C	DR1334	IS2621(100%)	IS2621(100%)	IS4	1339161	1337911	1251	416	c	t	1339215	1337894	1322	7	19		1322
ISDra2D	DR1381	ISDra2B(100%)	ISDra2B(100%)	IS605	1388871	1387645	1227	408	c	t	1389378	1387638	1741	0	6/8
DR1382	ISDra2B(100%)	1389280	1388858	423	140	c	t
ISDra4A	DR1453			IS630	1455962	1456970	1009	335		t	1455920	1456971	1048	0	19/25			No translation available. Authentic frameshift
ISDra6A	DR1523		IS1741(54%)	IS630	1538228	1539092	865	287		t	1538035	1539106	1072	0	20/21			No translation available. Authentic frameshift
ISDra2E	DR1592	ISDra2B(99%)	ISDra2B(100%)	IS605	1611698	1612120	423	140		t	1611600	1613340	1741	0	6/8			Position 693 (DNA) G to S (?), mutation (aa) at position 181 P-->X.
DR1593	ISDra2B(99%)	1612107	1613333	1227	408		t
IS2621D	DR1618	IS2621(100%)	IS2621(100%)	IS4	1638183	1639433	1251	416		t	1638129	1639450	1322	6	19		1322
ISDra2F	DR1651	ISDra2B(100%)	ISDra2B(100%)	IS605	1676198	1674972	1227	408	c	t	1676705	1674965	1741	0	6/8
DR1652	ISDra2B(100%)	1676607	1676185	423	140	c	t
IS2621E'		IS2621(91%)									1788707			0	19	1788707(1)-1789167(461)	461	Disrupted.
ISDra4B	DR1761	ISDra4A (98%)		IS630	1790174	1789166	1009	335	c	t	1790213	1789166	1048	0	18/25			No translation available. Authentic frameshift
IS2621E''	DR1762	IS2621(87%)	IS2621(92%)	IS4	1790239	1791057	819	273		t		1791074		0	19	1790215(463)-1791074(1322)	860	End of the transposase (146 to 416), mutation at positions 153 R-->L, 180 P-->Q, 197 S-->P, 213 F-->L, 220-221 KY-->ND, 234 P-->K, 254-256 ETS-->ARP, 338 P-->Q, 363 E-->G and 390 K-->N. Mutation causing a premature stop at position 400 of the transposase.
	DR1927		ISDra2B(55%)	IS200	1948952	1948515	438	145	c	t								Part of the transposase (9 to 134), many mutations.
ISDra2G	DR1932	ISDra2B(100%)	ISDra2B(100%)	IS605	1953297	1953719	423	140		t	1953199	1954939	1741	0	6/8
DR1933	ISDra2B(100%)	1953706	1954932	1227	408		t
IS2621-P		IS2621(96%)							c							1973142(1)-1973118(25)	25
ISDra4C	DR2028	ISDra4A (98%)		IS630	2044236	2043228	1009	335	c	t	2044276	2043228	1048	0	19/25			No translation available. Authentic frameshift
IS2621F	DR2222	IS2621 (100%)	IS2621(100%)	IS4	2220156	2218906	1251	416	c	t	2220210	2218889	1322	5	19		1322
ISDra2H	DR2323	ISDra2B(100%)	ISDra2B(100%)	IS605	2321524	2321946	423	140		t	2321426	2323166	1741	0	6/8
DR2324	ISDra2B(100%)	2321933	2323159	1227	408		t
	DR2424				2428543	2427408			c	t								No translation available. Authentic frameshift
ISDra4D	DR2425	ISDra4A (98%)		IS630	2429191	2428583	609	202	c	t	2429631	2428584	1048	0	18/25
IS2621-P		91% identity with IS2621	IS4					c							2491687(1)-2491663(25)	25

Bold is for complete copies of an IS
Italic is for partial copies of an IS (1)"c" is for complementary strand
(2)"t" is for transposase

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