Halobacterium sp NRC-1, plasmid NRC100

 

Contributor : Ng,W.V. et al.

 
Chromosome
Plasmid NRC100
Plasmid NRC200
  List of ISH1 copies   List of ISH7 copies
List of ISH2 copies List of ISH8 copies, IRs , transposase alignment
List of ISH3 copies, IRs , transposase alignment List of ISH9 copies

List of ISH4 copies

 List of ISH10 copies, IRs , transposase alignment
List of ISH5 copies List of ISH11 copies
List of ISH6 copies, IRs, transposase alignment List of ISH12 copies, IRs , transposase alignment

 

IS name

orf name

Simililarity DNA

Similarity AA

Family

orf L end

orf R end

orf bp

# aas

(1) 

 (2) 

ISLend

ISRend

Length

DR

IR

IS coordinates present

Length

Comments

ISH7

H0026

      

1896

3044

  

382

    

1717

              

H0027

      

3719

1905

    

c

                  

H0052

      

4215

4610

          

5019

            

ISH3F

Our translation

ISH3A(100%)
(82%)

ISH3A(100%)

IS4

14013

12847

1167

388

c

  

14060

12663

1398

0

15/16

12662(1)-12680(19)
12770(99)-14061(1391)

   Similar to ISH27-1.
Deletion of "T" at position 1330, insertion of "TGGA"between positions 1350-1351, of "CT" between positions 1357-1358 and of "ACAGC" between positions 1363-1364.

ISH8F

H0196

ISH8B(88%)

ISH8B(93%)

IS4

14308

15582

1275

424

  

t

14194

15595

1402

0

 16/18     Similar to ISH26.

ISH12-P

  

ISH12(95%)

  

IS605

        

c

            

26940(1880)-26921(1899)

20

  

ISH8G

H0386

ISH8B(87%)

ISH8B(94%)

IS4

31896

30622

1275

424

c

t

32010

30609

1402

0

19

     Similar to ISH26

ISH3G

 Our translation

ISH3A(100%)

ISH3A(100%)

IS4

32090

33256

1167

388

    

32043

33431

1389

5

15/16

      

ISH9A

H0428

    

IS5

34534

35361

828

275

  

t

34456

35393

938

0

16

     Similar ISH28

ISH5A'

H0441

ISH5(100%)

  

IS4

36008

36844

837

278

    

35716

    

10

19/20

35716(1)-36764(1049)

1049

  

ISH11C

H0448

ISH11A(100%)

ISH11A(100%)

IS5

36807

37811

1005

334

  

t

36765

37832

1068

8

15

      

ISH5A"

H0455

ISH5(100%)

  

IS4

37690

38220

531

176

  

t

  

38233

  

10

19/20

37833(1042)-38233(1442)

401

  

ISH8H

H0646

ISH8B(100%)

ISH8B(100%)

IS4

58617

59891

1275

424

  

t

58502

59904

1403

10

17/19

     Similar ISH26

ISH10C

H0698

ISH10A(100%)

ISH10A(100%)

ISNCY

63303

64667

1365

454

    

63092

64675

1584

8

16/18

      

ISH2E

  

ISH2(100%)

  

IS4

            

70690

71210

521

10

19

      

ISH2F

  

ISH2(100%)

  

IS4

        

c

  

75174

74654

521

0

19

      

ISH8I

Our translation

ISH8B(86%)

ISH8B(91%)

IS4

79817

81091

1275

424

    

79702

81104

1403

0

18/19

      

ISH3H

Our translation

ISH3A(100%)
(82%)

ISH3A(100%)

IS4

82027

83193

1167

388

    

81980

83379

1398

5

15/16

 83379(1)-83361(19)
83271(99)-81980(1391)		   Deletion(DNA) of "T" at position 1330, insertion of "TGGA"between positions 1350-1351, of "CT" between positions 1357-1358 and of "ACAGC" between positions 1363-1364.

ISH7

H0951

      

86874

89618

        

86695

              

H0952

      

86883

88697

    

c

    

89618

            

ISH3-P

  

ISH3A(78%)

  

IS4

            

92313

        

92313(1)-92071(248)

248

  

ISH3I

Our translation

ISH3A(100%)
(93%)

ISH3A(99%)

IS4

101488

102654

1167

388

    

101441

102829

1389

5

15/16

102830(1)-102814(17)
102731(100)-101440(1391)

   Mutations at position 155 T-->R, 205 T-->A, 216 H-->N, 282 N-->T, 315 S-->A and 331 T-->V.

ISH3J

Our translation

ISH3A(99%)

ISH3A(100%)

IS4

105617

106783

1167

388

    

105570

106958

1389

5

15/16

      

ISH4B

H1306

ISH4A(100%)

ISH4A(100%)

ISNCY

123641

122757

885

294

c

t

123732

122729

1004

8

9/10

      

ISH8J

H1399

ISH8B(86%)

ISH8B(92%)

IS4

133628

132354

1275

424

c

t

133743

132341

1403

0

20

      

ISH3K

Our translation

ISH3A(100%)
(93%)

ISH3A(99%)

IS4

143864

142698

1167

388

c

  

143911

142523

1389

5

15/16

142522(1)-142538(17)
142621(100)-143912(1391)

   Mutations at position 155 T-->R, 205 T-->A, 216 H-->N, 282 N-->T, 315 S-->A and 331 T-->V.

ISH2G

  

ISH2(100%)

  

IS4

        

c

  

150774

150254

521

0

19

      

ISH3L

  

ISH3A(99%)

ISH3A(99%)

IS4

150923

152089

1167

388

    

150876

152264

1389

5

15/16

     Mutation at position 379 D-->N.

ISH2H

  

ISH2(100%)

   IS4            

153539

154059

521

10

19

      

ISH10D

H1655

ISH10A(100%)

ISH10A(100%)

ISNCY

160086

158722

1365

454

c

  

160297

158714

1584

8

16/18

      

ISH8K

H1709

ISH8B(100%)

ISH8B(100%)

IS4

164772

163498

    

c

t

164887

163485

1403

10

 17/19      

ISH5B'

H1903

ISH5(100%)

ISH5A"(100%)

IS4

185699

185169

531

176

c

t

  

185156

  

10

19/20

185556(1042)-185156(1442)

401

 Disrupted by ISH11

ISH11D

H1909

ISH11A(100%)

ISH11A(100%)

IS5

186582

185578

1005

334

c

t

186624

185557

1068

8

15

      

ISH5B"

H1917

ISH5(100%)

ISH5A'(100%)

IS4

187381

186545

837

278

c

t

187673

    

10

19/20

187673(1)-186625(1049)

1049

 IRR

ISH9B

H1931

ISH9A(100%)

ISH9A(100%)

IS5

188855

188028

828

275

c

t

188933

187996

938

0

16

      

ISH3M

Our translation

ISH3A(99%)

ISH3A(99%)

IS4

191298

190132

1167

388

c

  

191345

189958

1388

0

15/16

     Missing DR. Problem with coordinates ?
Deletion(DNA) of "G" at position 50 and mutation (aa) at position 1 V-->C.

Bold is for complete copies of an IS
Italic is for partial copies of an IS		           (1)"c" is for complementary strand
(2)"t" is for transposase

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