List of IS5Sa2 copies in  the Synechocystis sp. genome

 

 

Name : IS5Sa2A Length : 908 DR :3 IR :16/17 ORF1 :128(88-474)
ORF2 :142(471-899)
IRL : GAGCTCATTTATAAAGTCTTGTAATGGATAGCAAGTAGGAGAAGAAAAAA
IRR : GAGCCCATTTATAAAGTGGTAGAAGTAGCAGAAAGACGACGCAACATAAT
Insertion site :ACTCTCAACC<ATA>GCAGCCCGCA
Sequence : GAGCTCATTTATAAAGTCTTGTAATGGATAGCAAGTAGGAGAAGAAAAAAAGGAAAACTAAGAGTAAGAGCAGAA
GGAGACAAAGAGCATGAAAAGTCTGACAGCCTATGAAACAGACCTGAGCGATGCAGAATGGGCAATACTTGAACC
AATGATTCCTCCCGCAAAGCCCGGAGGACACCCACGAACCACAGATATGCGAGCGGTTTGTAATGGTATTTACTA
CCAACTAAAAACGGGTTGTCAATGGGCAATGTTACCCCATGACTTTCCTCCTAGTAGCACGGTCTATAGCTATTA
CCGTAAATGGCAACGTCATGGCGTGTGGGAAAGGCTCAATCTAAGGCTGTTGGAGCAATGCCGCCTCCAGAGTGG
CAAGAGCCTTGAGCCCAGCGTGATAGCGGCAGATAGTCAATCGGTAAAAACCACCGAAAAAAGGGGGAAGTCTAC
GGTTTTGACGGAGGTAAGAAGGTGAAAGGACGAAAGCGTCATCTAATCGTCGATAGTCTGGGCTTAGTCTTAAAA
GTGATAGTGACCGAAGCAAATGCAAGTGAACGCATCGTCACAGCTTATGCTCTGATGAGTTTGCTTGAAGAAGGA
ACTCAACTCCTCGAGTCTGTCAAGAGCATGTTAGTAGACCAGGGTTATCGAGGTGATACCTTTGGGTTAGCCATC
TGGCTCTTAATTCAAGCCAAAGTCCAGGTGATTAGTCGTTCAGGGAAGTCTTTTGAGGTCTTACCAAAAAGATGG
ATTGTCGAGAGGACGTTCGGTTGGTTGAACTGGTATCGTCGTTTGAGTAAGGATTATGAGCATCTACCAGAAATG
AGCGAAGCGGCTATTTATGCCGTGATGACTCGCATTATGTTGCGTCGTCTTTCTGCTACTTCTACCACTTTATAA
ATGGGCTC
Peptide :
ORF1 :
MKSLTAYETDLSDAEWAILEPMIPPAKPGGHPRTTDMRAVCNGIYYQLKTGCQWAMLPHDFPPSSTVYSYYRKW
QRHGVWERLNLRLLEQCRLQSGKSLEPSVIAADSQSVKTTEKRGKSTVLTEVRR

ORF2 :
MKGRKRHLIVDSLGLVLKVIVTEANASERIVTAYALMSLLEEGTQLLESVKSMLVDQGYRGDTFGLAIWLLIQAK
VQVISRSGKSFEVLPKRWIVERTFGWLNWYRRLSKDYEHLPEMSEAAIYAVMTRIMLRRLSATSTTL
Comments :.

 

Name : IS5Sa2B Length : partial DR :- IR :- ORF1 :86(88-348)
ORF2 :178
IRL :-
IRR : -
Insertion site :-
Sequence : -
Peptide :
ORF1 :
MKSLTAYETDLSDAEWAIVEPMIPPAKPGGHPRTTDMRAVCNGIYYQLKTGCQWAGQCYPMTFLLVARSIAIIVN
GNVMACGKGSI

ORF2 :
MKGRKRHLIVDSLGLVLKVIVTEANASERIVTAYALMSLLKEGTQLLESVKSMLVDQGYRGDTFGLAIWLLTQAK
VQVISRSGKSFEVLPKRWIVDRTFSWQRFCCPLCRSGDNGQNYTVETFKGSYSDNESLLTSQPWWGNSDLAFGAL
SQVEGELGFPNNTLDGIAGPLFAFDFSA
Comments :.
ORF1 : Homology with the full length ORF1 positions 1 to 55.
ORF2 : Homology with the full length ORF2 positions1 to 101, mutation at position 72 I-->T and 100 G-->S.

Name : IS5Sa2C Length : 907 DR :3 IR :16/17 ORF1 :107(150-473)
ORF2 :142(470-898)
IRL : GAGCTCATTTATAAAGTCTTGTAATGGATAGCAAGTAGGAGAAGAAAAAA
IRR : GAGCCCATTTATAAAGTGGTAGAAGTAGCAGAAAGACGACGCAACATAAT
Insertion site :AGGATGAAAT<TTA>GGGCACTTTT
Sequence : GAGCTCATTTATAAAGTCTTGTAATGGATAGCAAGTAGGAGAAGAAAAAAAGGAAAACTAAGAGTAAGAGCAGAA
GGAGACAAAGAGCATGAAAAGTCGACAGCCTATGAAACAGACCTGAGCGATGCAGAATGGGCAATAGTTGAATCA
ATGATTCCTCCCGCAAAGCCCGGAGGACACCCACGAACCACAGATATGCGAGCGGTTTGTAATGGTATTTACTAC
CAACTAAAAACGGGTTGTCAATGGGCAATGTTACCCCATGACTTTCCTCCTAGTAGCACGGTCTATAGCTATTAC
CGTAAATGGCAACGTCATGGCGTGTGGGAAAGGCTCAATCTAAGGCTGCTGGAGCAATGCCGCCTCCAGAGTGGC
AAGAGCCTTCAACCTAGCGTAATAGCGGCAGATAGCCAATCGGTAAAAACCACCGAAAAAAGGGGGAAGTCTACG
GTTTTGACGGAGGTAAGAAGGTGAAAGGACGAAAGTGTCACCTAATCGTCGATAGTCTGGGCTTAGTCTTAAAAG
GATAGTGACCGAAGCAAATGCAAGTGAACGCATCGTCACAGCTTATGCTCTGATGAGTTTGCTTGAAGAAGGAA
CTCAACTCCTCGAGTCTGTCAAGAGCATGTTAGTAGACCAGGGTTATCGAGGTGATACCTTTGGGTTAGCCATCT
GGCTCTTAATTCAAGCCAAAGTCCAGGTGATTAGTCGTTCAGGGAAGTCTTTTGAGATCTTACCAAAAATATGGA
TTGTCGAGAGGACGTTCGGTTGGCTGAACTGGTATCGTCGTTTGAGTAAGGATTATGAGCATCTACCAGAAATGA
GCGAAGCGGCTATTTATGCCGTGATGACTCCCATTATGTTGCGTCGTCTTTCTGCTACTTCTACCACTTTATAAA
TGGGCTC
Peptide :
ORF1 :
MIPPAKPGGHPRTTDMRAVCNGIYYQLKTGCQWAMLPHDFPPSSTVYSYYRKWQRHGVWERLNLRLLEQCRLQSG
KSLQPSVIAADSQSVKTTEKRGKSTVLTEVRR

ORF2 : MKGRKCHLIVDSLGLVLKVIVTEANASERIVTAYALMSLLEEGTQLLESVKSMLVDQGYRGDTFGLAIWLLIQAK
VQVISRSGKSFEILPKIWIVERTFGWLNWYRRLSKDYEHLPEMSEAAIYAVMTPIMLRRLSATSTTL
Comments :.
ORF2 : : Mutation at position 6 R-->C, 92 R-->I and 129 R-->P

 

 

IS HomePage | Genome | Synechocystis