Synechocystis sp. PCC6803

Contributor: KDRI

	List of IS1Sa copies , IRs, transposase alignment		List of IS4Sa2 copies, IRs, transposase alignment
	List of ISTcSa copies, IRs, transposase alignment		List of IS5Sa1 copies, IRs, transposase alignment
	List of IS4Sa1 copies, IRs, transposase alignment		List of IS5Sa2 copies, IRs, transposase alignment

IS name	orf name	Simililarity DNA	Similarity AA	Family	orf L end	orf R end	orf bp	# aas	(1)	(2)	ISLend	ISRend	Length	DR	IR	IS coordinates present	Length	Comments
ISTcSa2	sll1397	ISTcSa(96%)	ISTcSa(98%)	Tc	53180	52260	848	282	c	t	53180	52234	947	2	19/24		947	Mutations at positions 74 V-->I and 159-160 EI --> GD.
IS5Sa1-P		IS5Sa		IS5					c		none	107226				106914(560)-107226(871)	311
ISTcSa3	sll0700	ISTcSa(96%)	ISTcSa(98%)	Tc	123995	123501	494	165	c			123475	946	2	19/24		946	End of the transposase (119 to 282), mutation at position 41-42 (corresponds to 159-160 on the transposase) EI-->GD.
	sll0699		ISTcSA (99%)		124348	123 989	359	120	c	t	124420							First part of the transposase (1 to 101), mutation at position 74 V-->I.
	real peptide		ISTcSa (98%)		124348	123501		282										Mutation at position 159-160 on the transposase : EI --> GD. Frameshift -1 at position 375 (DNA).
ISTcSa-P	ssl0426	ISTcSa (83%)	ISTcSa (83%)	Tc	141123	141416	293	98		t	none	none				141398(646)-141199(845)	199	End of the transposase (186 to 280), many mutations.
ISTcSa4	slr1075	ISTcSa (95%)	ISTcSa (98%)	Tc	379065	379913	848	283		t	378993	379939	947	2	19/24		947	Mutations at positions 74 V-->I and 159-160 EI --> GD.
ISTcSa5	sll0651	ISTcSa (95%)	ISTcSa (98%)	Tc	422259	421765	494	165	c	t		421739	946	2	19/24		946	End of the transposase (119 to 282), mutation at position 41-42 (corresponds to 159-160 on the transposase) EI --> GD
	sll0650		ISTcSa (98%)		422612	422253	359	120	c	t	422684							First part of the transposase (1 to 101). Mutation at position 74 V-->I, 86 A-->V.
	real peptide		ISTcSa (98%)		422612	421765		282										Mutation at position 74 V-->I, 86 A-->V and 159-160 GD-->EI. Frameshift -1 at position 375 (DNA).
IS5Sa1-P		IS5Sa									473025	none				47305(1)-473041(17)	17
IS5Sa1-P	ssr2699	IS5Sa	IS5Sa (85%)	IS5	473414	473662	248	83		t	none	none				473098(78)-473645(629)	551	Part of the transposase(111 to 191), many mutations.
IS5Sa1-P		IS5Sa									none	none				473689(669)-473722(702)	33
IS5Sa1-P		IS5Sa									496211	none				496211(1)-496226(16)	16
IS5Sa1-P	ssl1922	IS5Sa	IS5Sa(92%)	IS5	520918	521169	251	84		t
IS5Sa1-P	ssl1920	IS5Sa	IS5Sa (95%)	IS5	521076	521357	281	94		t	none	none				521347(78)-521122(303)	225
IS5Sa1-P		IS5Sa									none	520871				521121(620)-520871(871)	251
IS4Sa2-P	ssr3452	IS701	IS4Sa2A(99%)	IS4	572736	572909	173	57	c	t	572671	none				572671(1)-572906(232)	241	First part of the transposase (4 to 27).
IS4Sa1A	slr2036	IS4Sa	IS4Sa (98%)	IS4	573494	574510	1016	339		t	573408	574581	1174	0	11/14	(coords 67-1241 IS4Sa1)	1174	Mutations at position 96 G-->R, 112 S-->R, 125 V-->L and 128 G-->E. IS4Sa1A is shorter than  the IS4Sa copy  in the database.
IS1Sa-P		IS1		IS1					c		none					605288(470)-604957(801)	331
IS4Sa2-P				IS4					c		605472	none				605472(1)-605441(32)	32
ISTcSa6	sll1930	ISTcSa (96%)	ISTcSa (97%)	Tc	606035	605541	494	165	c		606460	605515	946	2	19/24		946	End of the transposase (119 to 282), mutation at position 41-42 (corresponds to 159-160 on the transposase) EI --> GD, 99 (217) M-->V, 162 (280) C-->R.
	real peptide		ISTcSa (97%)		606387	605541	846	282										Mutation at first position, ATG --> ATA (M --> I), 74 V-->I, 159-160 GD-->EI, 280 C-->R.   Frameshift -1 at position 375 (DNA).
IS1Sa-P		IS1		IS1												608737(155)608972(390)	235
IS1Sa-P		IS1		IS1												608975(543)-609182(751)	208
IS4Sa2-P		IS4														633566(1216)-633763(1413)	198
IS1Sa-P	sll0986	IS1	IS1Sa2(97%)	IS1	664394	664780			c		none	664387				664772(424)-664387(802)	378	ORF2 of IS1Sa, homology begins at position 26 to 138 of IS1Sa2.
IS1Sa-P		IS1		IS1					c		664798					664798(1)-664769(30)	30
IS5Sa1-P		IS5Sa							c		none	753228				753244(855)-753228(871)	16
IS5Sa1-P		IS5Sa									768960	none				768960(1)-768976(17)	17
IS1Sa1	slr1902	IS1	IS1Sa(97%)	IS1	851717	852142	425	141			851653		801	0	16/22		801	ORF1, mutations at position 23 G-->D, 31 R-->S, 35 K-->Q, 46 L-->P, 59 G-->S, 77 L-->V and 120 R-->K.
	slr1903		IS1Sa2 (94%)		852031	852447	416	138				852454						ORF2, mutations at position 4 S-->P, 52 S-->Y, 93 L-->F, 99 P-->R, 102 I-->V, 109-110 VN-->ID, 126 I-->T, 128 L-->P and 131 N-->D.
IS5Sa2A	sll1792	IS1355	IS5Sa2 (100%)	IS5	852898	852470	428	142	c	t		852462	908	3	16/17		908
	sll1791	IS1355			853281	852895	386	128	c	t	853369
IS5Sa1A	sll1716	IS5Sa	IS5Sa (99%)	IS5	968352	967567	785	261	c	t	968419	967549	871	2	15/17		871	Mutation at position 48 L-->F and 81 R-->K.
IS4Sa2-P				IS4												1023486(311)-1023470(327)	17
ISTcSa7	slr1357	ISTcSa (95%)	ISTcSa (98%)	Tc	1098323	1099171	848	282		t	1098251	1099197	947	0	19/24		947	Mutation at position 74 V-->I, 159-160 EI --> GD, 202 K --> N, 207 P --> S.
IS5Sa1-P		IS5Sa									none	1104873				1104857(855)-1104873(871)	16
IS4Sa1B	sll1780	IS4Sa	IS4Sa (100%)	IS4	1201392	1200376	1016	338	c	t	1201479	1200306	1174	9	11/13	(coords 67-1241 IS4Sa1)	1174	IS4Sa1B is shorter than the IS4Sa copy of the database.
IS5Sa1-P		IS5Sa									none	1206745				1206729(855)-1206745(871)	16
IS5Sa1-P		IS5Sa							c		none	1213481				1213525(827)-1213481(871)	44
IS5Sa1B	sll1710	IS5Sa	IS5Sa (98%)	IS5	1275372	1276157	785	261	c	t	1275354	1276224	871	3	15/17		871	Mutation at position 248-249 LY-->IH and 253 V-->L.
ISTcSa8	slr0856	ISTcSa (94%)	ISTcSa (98%)	Tc	1346197	1346556	359	120		t	1346125		946	2	19/24		946	First part of the transposase (1 to 101), mutation at position 33 A-->I, 74 V-->I .
	slr0857		ISTcSa (98%)		1346550	1347044	494	165		t		1347070						End of the transposase (119 to 282), mutation at position 41-42 (corresponds to 159-160 on the transposase) EI --> GD
	real peptide		ISTcSa (98%)		1346497	1347044		282										Frameshift -1 at position 375(DNA). Mutation at position 33 A --> I,74 V-->I, 104 R --> C, 159-160 EI --> GD.
IS5Sa2B-P	ssr2078	IS1031/IS1355	ISSa2A(99%)	IS5	1384824	1385084	260	86		t	1384736		778			1384736(1)-1385514(774)		Homology with the transposase 1 to 55.
	slr1246	IS1031/IS1355	IS5Sa2A(97%)	IS5	1385212	1385748	536	178		t		none					778	Homology with the transposase 1 to 101, mutation at position 72 I-->T and 100 G-->S.
IS1Sa2	sll1157	IS1	IS1Sa2 (100%)	IS1	1386170	1385754	416	139	c			1385747	802	0	16/22	starts at 7	802	ORF2
	sll1156				1386484	1386059	425	142	c		1386548							ORF1
	slr2062	IS891/IS605	IS605 (52%)	IS605	1420940	1422142	1202	401		t							1202	ORFB.
ISTcSa9	slr1715	ISTcSa (96%)	ISTcSA (99%)	Tc	1463455	1463814	359	120		t	1463383		946	2	19/24		946	First part of the transposase (1 to 101), mutation at position 74 V-->I .
	slr1716		ISTcSa (98%)		1463808	1464302	494	165		t		1464328						End of the transposase (119 to 282), mutation at position 41-42 (corresponds to 159-160 on the transposase) EI --> GD
	real peptide		ISTcSa (98%)		1463455	1464302		282										Frameshift -1 at position 375(DNA). Mutation at position 74 V-->I, 159-160 EI --> GD.
IS5Sa1-P	ssr2898	IS5Sa	IS5Sa (94%)	IS5	1483397	1483603	206	69		t	none	1484062				starts at 199. 1483389(199)-1484062(871)	665	Part of the transposase(47 to 114), mutations at position (on the full transposase) 57L-->V, 73 Q-->P, 81 R-->K and 113 K-->R.
	our translation		IS5Sa (97%)		1483391	1484041	650	217										Part of the transposase (45 to 261), mutation at position 57 L-->V, 73 Q-->P, 81 R-->W, 113-115 KAG-->RA*, 120 T-->P and 206Q-->*, 219 V-->A and 257 L-->P.
IS5Sa1C	slr0265	IS5Sa1	IS5Sa (97%)	IS5	1513225	1514010	785	261		t	1513158	1514028	871	3	15/17		871	Mutation at position 81 R-->K, 150 G-->S, 189 Y-->F, 198 N-->T, 250 V-->G and 256 M-->I.
IS4Sa2-P	sll1985	IS701	IS4Sa2A(96%)	IS4	1553601	1553960	359	119		t	none	1553412				1553903(926)-1553412(1417)	492	End of the transposase (259 to 358), mutation 286 E-->G, 312 A-->V, 325 S-->F and 343 H-->R.
ISTcSa10	sll1984	ISTcSa (96%)	ISTcSA (98%)	Tc	1554423	1553929	494	165	c	t		1553903	946	2	19/24		946	End of the transposase (119 to 282), mutation at position 41-42 (corresponds to 159-160 on the transposase) EI-->GD.
	sll1983		ISTcSA (99%)		1554776	1554417	359	120	c	t	1554848							First part of the transposase (1 to 101), mutation at position 74 V-->I .
	real peptide		ISTcSA (98%)		1554776	1553929		282										Frameshift at position 375 (DNA).Mutation at position 74 V-->I, 159-160 EI-->GD.
IS4Sa2-P				IS4					c							1554975(802)-1554854(923)	122
IS4Sa2-P	sll1982	IS701/IS1357	IS4Sa2A(96%)	IS4	1555061	1555774	713	238	c	t	1555791	none				1555791(1)-1554976(812)	821	Part of the transposase (4 to 191), mutation at position 41 K-->N, 45 L-->S, 125 T-->A, 139 I-->T and 151 G-->D.
IS1Sa3	slr2095	IS1	IS1Sa2 (96%)	IS1	1561693	1562118	425	261		t	1561629		802	0	18/22		802	ORF1, mutations at position 23 G-->D, 31 R-->S, 35 K-->Q, 46 L-->P, 59 G-->S and 77 L-->V.
	slr2096		IS1Sa2(95%)		1562007	1562423	416	261				1562430						ORF2, mutations at position 5 Q-->K, 52 S-->Y, 84-85 RN-->SK, 93 L-->F, 99 P-->R, 103-104 IS-->VF, 107-108 AH-->PY, 111 N-->D and 119 K-->E.
IS4Sa2A	slr1522	IS701	IS701(72%)	IS4	1614572	1615648	1076	358		t	1614421	1615837	1416	0	18/19		1416
	slr1523		IS1302 (70%)	IS3	1615869	1616528	659	220		t							659
ISTcSa11-P	slr1524	ISTcSa (95%)	ISTcSA (86%)	Tc	1616904	1617419	515	172		t	1616832	1617509	678			1617324(498)-1617305(517)	678	First part of the transposase (1 to 164), mutation at position 74 V-->I and not aligned after position 134.
																1617385(552)-1617471(638)	86
																1617464(902)-1617509(947)	45
IS4Sa1C'	sll1999	IS4Sa P	IS4Sa (99%)	IS4	1623130	1623648	518	173	c	t		1623057		0	12/16	1623697(603)-1623057(1243)	640	Disrupted by ISTcSa12. End of the transposase (167 to 338), mutation at position 96 (corresponds to 262 on the transposase) L-->F.
ISTcSa12	sll1998		ISTcSa 98%	Tc	1623723	1624571	848	283	c	t	1624643	1623697	947	2	19/24		947	Mutations at positions 74 V-->I, 159-160 EI-->GD and 207 P-->S.
IS4Sa1C''	sll1997	IS4Sa	IS4Sa (100%)	IS4	1624628	1625095	467	156	c	t	1625184			0	12/16	1625184(65)-1624643(606)	541	Disrupted by ISTcSa12. First part of the tranposase (1 to 151).
ISTcSa13	slr2112	ISTcSa (96%)	ISTcSA (98%)	Tc	1626165	1626524	359	120		t	1626093		946	2	19/24		946	First part of the transposase (1 to 101), mutation at position 74 V-->I and 77 A-->V.
	slr2113		ISTcSA (98%)		1626518	1627012	494	165		t		1627038						End of the transposase (119 to 282), mutation at position 41-42 (corresponds to 159-160 on the transposase) EI-->GD.
	real peptide		ISTcSA (98%)		1626165	1627012		282										Mutation at position 74 V-->I, 77 A-->V and 159-160 EI-->GD. Frameshift -1 at position 375 (DNA).
IS5Sa2-P	ssr2227	IS1031	IS5Sa2(64%)	IS5	1679517	1679804	287	95		t							287
IS1Sa-P		IS1		IS1							none					1682495(625)-1682664(801)	176
IS1Sa-P		IS1		IS1					c							1702271(441)-1702133(582)	141
ISTcSa-P	ssl1507	ISTcSa (85%)	ISTcSa (71%)	Tc	1710814	1711014	200	67	c	t						1710930(805)-1710?(864)	59	End of the transposase (217 to 280), many mutations.
ISTcSa-P	sll0808		ISTcSA (51%)	Tc	1711093	1711659	566	189	c	t							566	First part of the transposase (1 to 189), mutation at position 159-160 EI-->GK and many others mutations.
ISTcSa14	sll1257	ISTcSa (96%)	ISTcSa (98%)	Tc	1725925	1725431	494	165	c	t		1725405	946	2	19/24		946	End of the transposase (119 to 282), mutation at position 41-42 (corresponds to 159-160 on the transposase) EI-->GD.
	sll1256		ISTcSa (99%)		1726278	1725919	359	120	c	t	1726350							First part of the transposase (1 to 101), mutation at position 74 V-->I .
	real peptide		ISTcSA (98%)		1726278	1725431		282										Mutation at position 74 V-->I and 159-160 EI-->GD. Frameshift -1 at position 375 (DNA).
IS4Sa1D	sll1255	IS4Sa	IS4Sa (99%)	IS4	1729012	1730028	1016	339	c	t	1730115	1728942	1174	0	11/13	(coords 67-1241 IS4Sa1)	1174	Mutation at position 37 L-->M and 262 L-->F.
IS4Sa2-P				IS4												1763359(419)-1763383(443)	25
ISTcSa-P	slr1282		ISTcSA (57%)	Tc	1877208	1877567	359	120		t							359	First part of the transposase (1 to 100) mutation at position 74 V-->K and many others mutations.
	slr1283	ISTcSa (86%)	ISTcSA (67%)	Tc	1877582	1878055	473	158		t						1877939(805)-1878003(869)	64	End of the transposase (126 to 280), mutation at position 41-42 (corresponds to 159-160 on the transposase) EI-->GE and many mutations..
ISTcSa15	sll1437	ISTcSa (96%)	ISTcSA (98%)	Tc	1901879	1901385	494	165	c	t		1901359	946	2	19/24		946	End of the transposase (119 to 282), mutation at position 41-42 (corresponds to 159-160 on the transposase) EI-->GD.
	sll1436		ISTcSA (99%)		1902232	1901873	359	120	c	t	1902304							First part of the transposase (1 to 101), mutation at position 74 V-->I .
	real peptide				1902232	1901385		282
ISTcSa-P	sll1094		ISTcSA (53%)	Tc	1923170	1923472	302	101	c	t							302	End of the transposase (186 to 261), many mutations.
IS4Sa1E	sll1560	IS4Sa (99%)	IS4Sa (99%)	IS4	1971968	1970952	1016	339	c	t	1972055	1970882	1174	9	11/13	(coords 67-1240 IS4Sa1)	1174	Mutations at position 211 G-->E, 291 c-->Y and 316 R-->C.
IS4Sa2-P	slr1682		IS4Sa2A(64%)	IS4	1970988	1970581	407	135		t								First part of the transposase (3 to 88), there are many mutations.
	slr1683		IS4Sa2A(73%)	IS4	1972549	1972154	395	130		t						1972410(708)-1972432(730)	23	Part of the transposase (101 to 231), many mutations.
	slr1684		IS4Sa2A(60%)	IS4	1972609	1973061	452	150		t							452	End of the transposase (253 to 347), there are many mutations.
IS1Sa-P		IS1		IS1							none	1973382				1973121(541)-1973382(802)	261
IS4Sa1F	slr1635	IS4Sa	IS4Sa(100%)	IS4	2048497	2049513	1016	339		t	2048410	2049583	1174	9	11/13	(coords 67-1241 IS4Sa1)	1174
IS1Sa-P		IS1		IS1							none	2156443				2156348(707)-2156443(802)	95
IS4Sa2-P				IS4					c							2190909(993)-2190605(1295)	305
IS4Sa2-P				IS4					c							2207688(574)-2207673(589)	16
IS5Sa1D-P	ssr0256	IS5sa	IS5Sa (77%)	IS5	2210451	2210705	254	85		t	none	none				2210344(78)-2211117(847)	769	Part of the transposase (40 to 158), many mutations.
	slr0166			IS5	2210626	2210928	302	101		t							302
	Our translation		IS5Sa (84%)		2210234	2211117	883	295										Mutation at position 16 W-->* and 97 W-->* and many other mutations. Frameshift at position 2210657.
IS5Sa1E-P	sll1861	IS5sa	IS5Sa (73%)	IS5	2226530	2225766	764	255	c	t	2226597	none				2226597(1)-2225990(608)	607	Deletion between positions 208 and 235 of the transposase, many mutations.
IS5Sa1-P		IS5Sa							c		none	none				2225906(770)-2225829(847)	77
IS5Sa1-P		IS5Sa							c		none	none				2225948(650)-2225905(693)	43
IS5Sa1F	sll1860	IS5Sa	IS5Sa (99%)	IS5	2227404	2226619	785	261	c	t	2227471	2226601	871	3	15/17		871	Mutation at position 73 Q-->P, and 81 R-->K.
ISTcSa16	slr1936	ISTcSa (96%)	ISTcSA (99%)	Tc	2235561	2235920	359	120		t	2235489		946	2	19/24		946	First part of the transposase (1 to 101), mutation at position 74 V-->I .
	slr1937		ISTcSA (98%)		2235914	2236408	494	165		t		2236434						End of the transposase (119 to 282), mutation at position 41-42 (corresponds to 159-160 on the transposase) EI-->GD.
	real peptide		ISTcSA (98%)		2235561	2236408		282										Mutation at position 74 V-->I and 159-160 GD-->EI. Frameshift at position 375 (DNA).
IS4Sa1G	slr0180	IS4Sa	IS4Sa (100%)	IS4	2327013	2328029	1016	339		t	2326926	2328099	1174	0	11/13	(coords 67-1241 IS4Sa1)	1174
IS5Sa1G-P	sll0161	IS5Sa	IS5Sa (83%)	IS5	2328695	2328393	302	101	c	t	none	none				2328977(78)-2328185(866)	788	Part of the transposase (108 to 196), lot of mutations.
	ssl0296				2328870	2328616	254	85	c	t							254
	Our translation		IS5Sa (91%)		2328988	2328181	807	269	c									Transposase, mutation at position 16 and 197 W-->*, many other mutations, frameshift at position 2328665.
IS5Sa1-P		IS5Sa							c		none	none				2330608(737)-2330735(864)	127
IS5Sa1H	slr0350	IS5Sa	IS5Sa (99%)	IS5	2441098	2441883	785	261		t	2441031	2441901	871	3	15/17	:	871	Mutation at position 73 Q-->P, and 81 R-->K.
IS4Sa1H''	sll0317	IS4Sa	IS4Sa (100%)	IS4	2443859	2443461	398	133	c	t		2443328		0	15/19	2443922(704)-2443328(1303)	595	Disrupted by ISTcSa17. End of the transposase (207 to 338).
ISTcSa17	slr0352	ISTcSa (96%)	ISTcSa (99%)	Tc	2443999	2444847	848	283		t	2443927	2444873	947	2	19/24		947	Mutations at positions 74 V-->I and 160 I --> D,
IS4Sa1H'	sll0315	IS4Sa	IS4Sa (100%)	IS4	2445426	2444743	683	228	c	t	2445579			0	15/19	2445579(1)-2444874(706)	706	Disrupted by ISTcSa17. First part of the transposase (1 to 184).
IS5Sa1I	sll0012	IS5Sa	IS5Sa (99%)	IS5	2483528	2482743	785	261	c	t	2483595	2482725	871	3	15/17		871	Mutation at position 73 Q-->P, and 81 R-->K.
ISTcSa18	sll0201	ISTcSa (96%)	ISTcSA (98%)	Tc	2525067	2524573	494	165	c	t		2524547	946	2	19/24		946	End of the transposase (119 to 282), mutation at position 41-42 (corresponds to 159-160 on the transposase) EI-->GD.
	sll0200		ISTcSa (99%)		2525420	2525061	359	120	c	t	2525492							First part of the transposase (1 to 101), mutation at position 74 V-->I .
	real peptide		ISTcSA (98%)		2525420	2524573		282										Mutation at position 74 V-->I and 159-160 GD-->EI. Frameshift at position 375 (DNA).
ISTcSa19	slr0230	ISTcSa (96%)	ISTcSa (98%)	Tc	2534106	2534954	848	283		t	2534034	2534980	947	2	19/24		947	Mutations at positions 74 V-->I and 159-160 on the transposase : EI --> GD.
ISTcSa-P	ssl0769		ISTcSA(78%)	Tc	2558423	2558617	194	65	c	t							194	End of the transposase (228-261), lot of mutations.
IS5Sa1-P		IS5Sa									2655157	none				2655157(1)-2655173(17)	16
IS5Sa1-P		IS5Sa							c		none	none				2655247(6)-2655209(44)	38
IS5Sa1-P									c		none	2707930				2707948(853)-2707930(871)	18
IS1Sa-P		IS1		IS1								2708045				2708045(706)-2707949(802)	96
IS1Sa-P		IS1		IS1					c							2708176(7)-2708045(138)	131
IS4Sa2-P	ssr0871	IS701	IS4Sa2A(88ù)	IS4	2921446	2921604	158	52		t	2921300	none				2921300(1)-2921595(292)	301	First part of the transposase (1 to 49), insertion of FKY at position 7 to 9.
IS5Sa1J	slr0511	IS5Sa (96%)	IS5Sa (97%)	IS5	2921660	2922439	779	259		t	2921593	2922457	865	3	15/17	Deletion between position 510 and 516 (ADN).	865	Deletion of AA at position 148-149, mutation at position 81 R-->K, 163 A-->G, 189 Y-->F and 198 N-->T.
IS4Sa2B	slr0099		IS4Sa2A (95%)	IS4	2968169	2969188	1019	339		t	2968018	2969385		0	18/19	2968018(1)-2969164(1141) 2969162(1194)-2969385(1417)	1147 224	Mutation at position 21 P-->A, 41 K-->N, 45 L-->S, 123 S-->P, 285 E-->G, 312 A-->V and 331-333 QTR-->KWM.
IS4Sa2-P	ssl0172	IS701	IS4Sa2A(64%)	IS4	2997811	2998080	269	89	c	t							269	End of the transposase (253 to 334), there are many mutations.
	ssl0092		IS4Sa2A(72%)	IS4	2998925	2998239	686	228	c	t						2998571(416)-2998544(443)	28	First part of the transposase (3 to 183), there are many mutations.
IS5Sa1-P		IS5Sa							c		none	3016746				3016762(855)-3016746(871)	16
IS5Sa2C	slr0799	IS1335	IS5Sa2A(99%)	IS5	3066428	3066751	323	107		t	3066278		907	3	16/17		907
	slr0800	IS1031	IS5Sa2A(97%)	IS5	3066748	3067176	428	143		t		3067184						Mutation at position 6 R-->C, 92 R-->I and 129 R-->P.
IS5Sa1-P		IS5Sa									none	none				3067060(755)-3067085(780)	25
IS5Sa1K	sll0677	IS5Sa	IS5Sa (99%)	IS5	3094692	3093907	785	262	c	t	3094759	3093889	871	3	15/17		871	Mutation at position 73 Q-->P and 81 R-->K.
	ssl1277	ISRm3	ISRm3(69%)	IS256	3094772	3094969	197	66	c	t							197	End of the transposase(355 to 398),  many mutations.
ISTcSa20'	ssr1175	ISTcSa (97%)	ISTcSA (94%)	Tc	3096047	3096331	284	95		t	3095975					3095975(1)-3096319(345)	344	First part of the transposase (1 to 94), mutation at position 74 V-->I and 92-94 KKM-->ERV.
IS5Sa1L	slr0703	IS5Sa	IS5Sa (99%)	IS5	3096387	3097172	785	262		t	3096320	3097190	871	3	15/17		871	Mutation at position 73 Q-->P and 81 R-->K.
ISTcSa20''	smr0002	ISTcSa (100%)	ISTcSa (96%)	Tc	3097274	3097378	104	35		t	none	none				3097223(376)-3097363(516)	140	Part of the transposase (119 to 149), mutation at position 31 (corresponds t149 on the transposase) A-->S.
ISTcSa21	slr0704	ISTcSa (96%)	ISTcSa 98%	Tc	3097435	3098283	848	283		t	3097363	3098309	947	2	19/24		947	Mutations at positions 74 V-->I and 159-160 on the transposase : EI --> GD.
ISTcSa20'''	ssr1176	ISTcSa (96%)	ISTcSA (100%)	Tc	3098424	3098717	293	98		t		3098743				3098348(552)-3098743(947)	395	End of the transposase (186 to 282).
IS4Sa2-P	sll0668	IS701	IS4Sa2A(90%)	IS4	3108642	3109022	380	127	c			3108629				3109760(287)-3108629(1417)	380	End of the transposase (292 to 356), mutation at position 313 A-->I and 350-355 VDGKTY-->SGGKNI.
	sll0667		IS4Sa2A(97%)		3109035	3109694	659	219	c	t>	none						1132	Part of the transposase (68 to 286), mutation at position 123 S-->P, 125 T-->A and 205 G-->R.
IS5Sa1M-P	sll0666	IS5Sa	IS5Sa (95%)	IS5	3109732	3110151	419	140	c	t							419	End of the transposase (137 to 260), deletion at position 148-149, mutation at position163 A-->G, 189 Y-->F, 198 N-->T. There is no stop codon .
	sll0665		IS5Sa (97%)		3110559	3110215	344	115	c	t	3110626	3109761	866				866	First part of the transposase (1 to 114), mutation at position 73 Q-->P and 81 R-->K.
IS4Sa2-P				IS4												3176497(4)-3176516(23)	20
IS5Sa1-P		IS5Sa							c		none	3305394				3305410(855)-3305394(871)	16
IS5Sa1-P		IS5Sa														3352862(20)-3352877(35)	15
IS4Sa1I	sll1474	IS4Sa	IS4Sa (100%)	IS4	3400402	3401418	1016	339	c	t	3401505	3400332	1174	9	11/13	(coords 67-1241 IS4Sa1)	1174
ISTcSa-P	slr1585		ISTcSa (53%)	Tc	3405462	3405848	386	129		t							386	First part of the transposase (1 to 107), mutation at position 74 V-->K and lot of others mutations.
	slr1586		ISTcSA (67%)	Tc	3405991	3406311	320	107		t							320	End of the transposase (179 to 280), lot of mutations.
IS5Sa1-P		IS5Sa									3509747	none				3509747(1)-3509762(16)	15
IS4Sa2C	slr0460	IS701	IS4Sa2A(95%)	IS4	3511818	3512291	473	157		t	3511667					3511667(1)-3512288(613)	622	First part of the transposase (1 to 154), insertion of FKY at positions 7to 9, mutation at position 41 K-->N, 45 L-->S, 123 S-->P and 140 A-->V.
	ssr0817	IS701	IS4Sa2A(96%)	IS4	3513229	3513441	212	70		t						3513234(610)-3513436(812)	203	Part of the transposase (154 to 220), mutation at position 160 D-->Y and 205 G-->R.
	slr0462	IS701	IS4Sa2A(92%)	IS4	3513516	3514040	524	174		t		3514053				3513437(802)-3514053(1417)	617	End of the transposase (244 to 356), mutation at position 251 C-->F, 286 E-->G, 312 A-->V and 350-355 VDGKTY-->SGWKNI.
ISTcSa22	sll0431	ISTcSa (96%)	ISTcSa 98%	Tc	3512315	3513163	848	283	c	t	3513235	3512289	947	2	19/24		947	Mutations at positions 74 V-->I and 159-160 EI-->GD.
IS5Sa1-P		IS5Sa									3549859	none				3549859(855)-3549875(871)	16