ISNph4

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007428 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160 plasmid PL131
DNA section
IS Length : 929 bp

Ends


IR Length : 14/15

IRL : TGCCGTGTTGAATAGCGATCTAATCCGCTCATATCGCGGAGTAGAAGGGC
IRR : TGCTGTGTTGAATAGATGCTGAGTCACGGTTACAGAGGCTCACAGAGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
ACGATCTTCGTTGATTCA0

DNA sequence

TGCCGTGTTGAATAGCGATCTAATCCGCTCATATCGCGGAGTAGAAGGGCGAAGCCGAGGAAATCGATTCTGTCCATGGAAGTCGATCTCCTCGACTTCG
TTGAACAGTGTCGGCACCTAGTCAAACAAGCGTTGGGGAAGCACGCGGGCGAGCCCGCCAGCGGCGGGTTCGCCCGCTGGAAACACGTCGTTTTGCACTG
TTTTCGGCTCGAAGAAGACCACAGCTACCGCGAAACGCCGAATCGGCTGGAGTATATGGCCGAAATTCGTGACGTACTCGACTTAGATCGGGACGATCTG
CCGGATTACAGCACGATCTACAAATCGTTCGACCGGCTGAAAATGTGGGTGTGGCGGGCGCTGCTGCGCGTTTCAGCGCAGCAGCACCCGCAGTCCGGAC
ATGCAGCACTCGACAGCACGTTCTTCGACCGCCGCTCGGCCTCGTCGTACTATCGCCAGCGGTCGGGAAGTAACGTTCAAACACTGAAAGTGACGACATT
AACCGACAGAGAGTCTCTTGCCGTCCTTGATGTACATATCTCGGCCCGGTGGAAACACGATACGAAGACCGGGCCGCAGGTCGTCCGCCGGAACGCGGAC
GACCTGCTCTCGGTGGCTGCTGACAAAGCGTTCCACAACTGGATCACGAAATACGAGTTCTACGCGCTCGGTGTCGAGCCACTCATCTTACAGCGTGGAT
CGAGACCGTTGACGGTAGGATATAACGCTCTCATCCGGACAAAAGGCTACGCTCAGCGTTGGATGGCCGAGACTTCGTATTCGACAACGAAGCGCTCGCT
CGGCGATGCCGTGCGAGCGCTCGGCTGGTATCGACAGTTCCGTGAAATCGTCCTCATGTTCGCCACCTCGAACATAGAACCGCTCTGTGAGCCTCTGTAA
CCGTGACTCAGCATCTATTCAACACAGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
825 bp274 aa76900+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEVDLLDFVEQCRHLVKQALGKHAGEPASGGFARWKHVVLHCFRLEEDHSYRETPNRLEYMAEIRDVLDLDRDDLPDYSTIYKSFDRLKMWVWRALLRVS
AQQHPQSGHAALDSTFFDRRSASSYYRQRSGSNVQTLKVTTLTDRESLAVLDVHISARWKHDTKTGPQVVRRNADDLLSVAADKAFHNWITKYEFYALGV
EPLILQRGSRPLTVGYNALIRTKGYAQRWMAETSYSTTKRSLGDAVRALGWYRQFREIVLMFATSNIEPLCEPL

 

Blast result :
Comments
ISNph4 is 89% aa similar to ISHma9.
References
1] Falb,M., Pfeiffer,F., Palm,P., Rodewald,K., Hickmann,V., Tittor,J.
and Oesterhelt,D. (2005) Genome Res. In press