ISLca4

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008526 ND Lactobacillus casei
Lactobacillus casei ATCC 334
DNA section
IS Length : 1595 bp

Ends


IR Length : 19/24

IRL : CTAGGTGTAAAGTTTCTCTCGGTTAGGTCCGAGTCAGAAGGATAAATTGA
IRR : GTATGTGTCAAGTCTTTCTCGGTTCCACTAATTGAACTATTCTTTTTTGC

Insertion site


Left flankDirect repeatRight flankDR Length
CAAGTAGAACGGGAAAACAA0

DNA sequence

CTAGGTGTAAAGTTTCTCTCGGTTAGGTCCGAGTCAGAAGGATAAATTGACAAAAGAAGACCGCTTGTCCTCTAATTGAGCTACCACACAAAATCAGAGA
GAAGCGATCTTCCATGTCCTCAATTGTAGCAATTGTCCTTGAAGCTTTAAAGTCCAATGACTCCATTATCAGTGCTGAAAGTCAAATGATGACCGAGCTC
AGCCAGTTGGTCTGTGCCGGCGTAGCTCAGGCTTGTGAGCAACTTGATGATGATTTGTGCCTTGGTCATAAGGATTACAGAATCATTCACAAGGATCAGC
GGCACATCACTGCCATGTTCGGTGATGTCGTGTTTAAGCAGCGCTTGGTGAAAGATGACAGTGGCCGGCTCTTTTACCCGTTTGACGAAAAGGTTGGCTT
AGCTACGGGTCGACGCTTCACACCAATGATCATGGCTAAGGTCGCCGAACTAGCCTCGTTGACTGTGATGCGGACAACCGCGAAGGCCGTTGATCTTCTA
ACGCCATTCTCGATGTCAGCGATGACCGTGGATAACTTAGTGCGCGAGGCTGGACAAGAGCTAGACACGGTACGTGAAGCCGAGGCCAAGTACGTCACGG
TGGAGGTAGACCGGCGAGCAGTACCGCAACTGTTCATCGAAGGCGATGCCTTTGAGGTGAAGCTGAAGCATGGCACTCAGGTAATGGTTCATCGCGTCCA
AATCAGTGAAGGCGTGACGCAGTCAGGCAAGCGGCACCAGTTGATCAACCGGCATAGCATCACCGGGCTGTCGCACGAGAAGGTCTTTGATGAAGCCAGG
TCATACATCGACCAGCACTACGATTTGCGCGAGACCTGCGTCCTGACCGGCAGTGATAATGGGTCTGGTTATAGTCCTAAGGCGTTCAAGGAGTTGGTCC
CGGGCGCCGCTAGGTGGGCGCACGTGCTAGACGACTACCACCTGAATCGCAAGCTCAAGGAGCGGTTCAGCATGATGCCACGTGATCTGCAAGACCTACT
CCGCAAGTCAGTTTGGACTGGCAACAAGGCCAGAACAGAGATGGTCTTGGATACCGCGGAAAGCATGGTTCAAGACACCGATTCAGGGGACTCAATGTGC
AGTGAATGGCTCGATAATCTCACCAAGCTTCGGCGCTATCTTGACCGAAATTGGCCTTACATCGAGGCACTTTCGAATCGACAATTGGATCGGCGTGGAC
TTGGAAGCTGTGAGTCTAACCATAGACGGTATACGTATCGGACCAAGCTGCAGGGCCGTTCATGGACAAGAAGTGGTCTGATCGCAGAGTTGAGGATCAT
TGACGCGCTGCAGAACGATGATTGCCTCAGCAGTCTGGAAGCTACGGCGTTTCTGGAAACGCAAATCAAGCCAGAAGTGAAGACCACGCTTCGGAGCCTT
CAGCTGTTTGGGCCAGCGCCCACAACGCACCAGGGTGCTTATCAGGGACGTATAGCGCTGTACGCAAGTACTAGTTCGGGCACTGGTCACCTAGCACACA
TCTTCAACTGAACCCACTCAGTAGACCAGGATGACCGGCAGTCGAGCAAAAAAGAATAGTTCAATTAGTGGAACCGAGAAAGACTTGACACATAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1398 bp465 aa1141511+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSIVAIVLEALKSNDSIISAESQMMTELSQLVCAGVAQACEQLDDDLCLGHKDYRIIHKDQRHITAMFGDVVFKQRLVKDDSGRLFYPFDEKVGLATGR
RFTPMIMAKVAELASLTVMRTTAKAVDLLTPFSMSAMTVDNLVREAGQELDTVREAEAKYVTVEVDRRAVPQLFIEGDAFEVKLKHGTQVMVHRVQISEG
VTQSGKRHQLINRHSITGLSHEKVFDEARSYIDQHYDLRETCVLTGSDNGSGYSPKAFKELVPGAARWAHVLDDYHLNRKLKERFSMMPRDLQDLLRKSV
WTGNKARTEMVLDTAESMVQDTDSGDSMCSEWLDNLTKLRRYLDRNWPYIEALSNRQLDRRGLGSCESNHRRYTYRTKLQGRSWTRSGLIAELRIIDALQ
NDDCLSSLEATAFLETQIKPEVKTTLRSLQLFGPAPTTHQGAYQGRIALYASTSSGTGHLAHIFN

 

Blast result :
Comments
References
1] Romain Guérillot and Philippe Glaser (2012) Direct submission.