ISNfa1
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_006361 | ND | Nocardia farcinica | Nocardia farcinica IFM 10152 |
DNA section
IS Length : 1118 bp
Ends
IR Length : 37/47
IRL : TGTTGCGGGTCGTGACGTTGGTGACGCGGTGGCGGTGGTGAGCTGAGGGC
IRR : TGTATGAGGCCGTGACGTTGGTGACGCCGGTGTGGAGGCGGCTGGCTGGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGCCGCGAGC | CTTAGT | TGTGTCCGTT | 6 |
DNA sequence
TGTTGCGGGTCGTGACGTTGGTGACGCGGTGGCGGTGGTGAGCTGAGGGCGGTTCTTTCGGCGGCAGGATGTGAAGCGCCAACTACCACGTCCGCCGCAA
GCCGAAAGAACCGCCGTGATTCACCGTAATGCCCCTTTGACCGTGGAGGGCCGCTACCGGCTCGTGCAACGCTGCCAGGTGCGGCCGATCGCTCATGTCG
CCGCCGAAATGGGGCTGTCACGCCAGTGTGCGAGCAAGTGGGTCAACAGGTTTCGCCGGTTCGGTGAGCTGGGCCTGATCGACCGATCCTCGGTGCCGCA
CCGGTCACCGGCAGCGACACCCGCCGAGACGATCGTGCGGATCGAACAGCTGCGACGTGAGCGCAAATGGTCGGCACGACGCATCGCTACCGAGCTGCGG
GCCGAGGGCATGACGATCTCGGTACGCACGGTCAGTCGCCACCTGCACCGGCTGGGACTGAACCGGCGGCGGTTTCTCGACCCCGCCGGCGCATCGAACC
GCGCACCGCGTCGCATCATCGCCCACCGTCCCGGTCACATGGTGCACATCGACGTCAAGAAGGTCGGACGCATCCCCGACGGCGGCGGCTGGCGTGTGCA
CGGCAAAGGCTCCGATCGGGACAAGGCTGTCGCCCGCGCAAAGAAGCGTGGCACCCGCACCGGGTATGTGTTCCTGCACACCGCGGTCGACGGGTTCTCC
CGGCTGGCTTACACCGAGGCTCTGCCGGACGAGAAAGCCCTCACCGCGATCGGGTTCGTTTTCCGGGCCAGAGCGTTCTTCGCCGCTCACGGCATCAGCC
GCATACAGCGGATCGTCACCGACAACGGCGCCTGCTACCGGGCGGCCGATTTCTCCAAGGTGCTGCTCGGCGCTCGCCACCAGCGCATCAACCCCTACAC
GCCACGGCACAACGGCAAGGTCGAGCGCTACCACCGCATCCTGGCCGAGGAATTCCTCTACGCCCGTGAATGGACCAGCGAAACCCAACGCACCGACGCA
CTCGGAATCTGGAACATCCACTACAACTACCATCGACCCCACACTGCCGCCGGAAACCGGCCACCAGCCAGCCGCCTCCACACCGGCGTCACCAACGTCA
CGGCCTCATACA
GCCGAAAGAACCGCCGTGATTCACCGTAATGCCCCTTTGACCGTGGAGGGCCGCTACCGGCTCGTGCAACGCTGCCAGGTGCGGCCGATCGCTCATGTCG
CCGCCGAAATGGGGCTGTCACGCCAGTGTGCGAGCAAGTGGGTCAACAGGTTTCGCCGGTTCGGTGAGCTGGGCCTGATCGACCGATCCTCGGTGCCGCA
CCGGTCACCGGCAGCGACACCCGCCGAGACGATCGTGCGGATCGAACAGCTGCGACGTGAGCGCAAATGGTCGGCACGACGCATCGCTACCGAGCTGCGG
GCCGAGGGCATGACGATCTCGGTACGCACGGTCAGTCGCCACCTGCACCGGCTGGGACTGAACCGGCGGCGGTTTCTCGACCCCGCCGGCGCATCGAACC
GCGCACCGCGTCGCATCATCGCCCACCGTCCCGGTCACATGGTGCACATCGACGTCAAGAAGGTCGGACGCATCCCCGACGGCGGCGGCTGGCGTGTGCA
CGGCAAAGGCTCCGATCGGGACAAGGCTGTCGCCCGCGCAAAGAAGCGTGGCACCCGCACCGGGTATGTGTTCCTGCACACCGCGGTCGACGGGTTCTCC
CGGCTGGCTTACACCGAGGCTCTGCCGGACGAGAAAGCCCTCACCGCGATCGGGTTCGTTTTCCGGGCCAGAGCGTTCTTCGCCGCTCACGGCATCAGCC
GCATACAGCGGATCGTCACCGACAACGGCGCCTGCTACCGGGCGGCCGATTTCTCCAAGGTGCTGCTCGGCGCTCGCCACCAGCGCATCAACCCCTACAC
GCCACGGCACAACGGCAAGGTCGAGCGCTACCACCGCATCCTGGCCGAGGAATTCCTCTACGCCCGTGAATGGACCAGCGAAACCCAACGCACCGACGCA
CTCGGAATCTGGAACATCCACTACAACTACCATCGACCCCACACTGCCGCCGGAAACCGGCCACCAGCCAGCCGCCTCCACACCGGCGTCACCAACGTCA
CGGCCTCATACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1047 bp | 348 aa | 72 | 1118 | + | No |
Chemistry : DDE
ORF sequence :
MKRQLPRPPQAERTAVIHRNAPLTVEGRYRLVQRCQVRPIAHVAAEMGLSRQCASKWVNRFRRFGELGLIDRSSVPHRSPAATPAETIVRIEQLRRERKW
SARRIATELRAEGMTISVRTVSRHLHRLGLNRRRFLDPAGASNRAPRRIIAHRPGHMVHIDVKKVGRIPDGGGWRVHGKGSDRDKAVARAKKRGTRTGYV
FLHTAVDGFSRLAYTEALPDEKALTAIGFVFRARAFFAAHGISRIQRIVTDNGACYRAADFSKVLLGARHQRINPYTPRHNGKVERYHRILAEEFLYARE
WTSETQRTDALGIWNIHYNYHRPHTAAGNRPPASRLHTGVTNVTASYT
SARRIATELRAEGMTISVRTVSRHLHRLGLNRRRFLDPAGASNRAPRRIIAHRPGHMVHIDVKKVGRIPDGGGWRVHGKGSDRDKAVARAKKRGTRTGYV
FLHTAVDGFSRLAYTEALPDEKALTAIGFVFRARAFFAAHGISRIQRIVTDNGACYRAADFSKVLLGARHQRINPYTPRHNGKVERYHRILAEEFLYARE
WTSETQRTDALGIWNIHYNYHRPHTAAGNRPPASRLHTGVTNVTASYT
Blast result :
Comments
ISNfa1 is 58% (ORF) aa similar to IS1122.
The Stop codon is in DR.
The Stop codon is in DR.
References
1] Ishikawa,J., Yamashita,A., Mikami,Y., Hoshino,Y., Kurita,H., Hotta,K., Shiba,T. and Hattori,M. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 14925-14930.