ISNme3

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EU164779 ND Neisseria meningitidis
Neisseria meningitidis W:2a:P1.7-2,4 ST-11
DNA section
IS Length : 745 bp

Ends


IR Length : 19

IRL : GGGGCTTAGGAAGCAAAATCATCAAAAAACCTGATAAGCTCCTAATATGA
IRR : GGGGCTTAGGAAGCAAAAATATTAAATTGGGTTATTTCGAAGCATCTTCA

Insertion site


Left flankDirect repeatRight flankDR Length
TTAAATGAATTTTATAAATAACTTAATATCTAATATTT7

DNA sequence

GGGGCTTAGGAAGCAAAATCATCAAAAAACCTGATAAGCTCCTAATATGAAACTAAAAAATAAGTATCAAAAGTTCAGCAAAATTTCAGAGCAAAAGTTT
AGAGAAATAATCCGCTGTTTCGCTCTTGATTTGACCGCTTCCGATACTGCTAAAATGACCGGCATTAGTGTACGCGGTATCAATCCTATTTTCCTGAAAA
TCAGACACAGGATTGCTGCTCTGTGCGAACAAAGCTCACCACTGTCCGGTGTGGTCGAATTAGATGAATCTTACTTTGGTGCGCGACGTATCAGGGGTAA
GCGCGGTCGCGGAGCGTCAGGTAAAACCATCGTATTTGGCATACTGAAACGCAATGGCGTGGTCTATACGGAAATCGTTCCCGACGCTTCGAAAGCCTCA
CTAATCAAGGTCATACGTGGTCACATATCTGCTGACAGTGAAATCAATACTGACGGCTGGAAAGCATATGACGGTCTTGTCGATATGGGCTATGAGAAGC
ATTACCGTGTCCATCATGGTTCCAATGAGTTTGCTCGAGGAAAGCAACATATCAATGGTATTGAATCTTTTTGGAGTTATACTAAGGGGCGTTTGGCTAA
ATTTCATGGTATTTCCAAAGAGATGTTTTATCTGCATCTCAAAGAAACGGAGTTTAGGTTTAACCACCGGCATGAAGATTTAGGTAAAATATTAATGAAG
ATGCTTCGAAATAACCCAATTTAATATTTTTGCTTCCTAAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
678 bp225 aa47724+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKLKNKYQKFSKISEQKFREIIRCFALDLTASDTAKMTGISVRGINPIFLKIRHRIAALCEQSSPLSGVVELDESYFGARRIRGKRGRGASGKTIVFGIL
KRNGVVYTEIVPDASKASLIKVIRGHISADSEINTDGWKAYDGLVDMGYEKHYRVHHGSNEFARGKQHINGIESFWSYTKGRLAKFHGISKEMFYLHLKE
TEFRFNHRHEDLGKILMKMLRNNPI

 

Blast result :
Comments
ISNme3 is 96% aa similar to ISNme2.
References
1] Beddek,A.J., Jordan,T.W. and Martin,D.R.(20007) Direct submission GenBank.