ISNme4

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003112 ND Neisseria meningitidis
Neisseria meningitidis MC58
DNA section
IS Length : 712 bp

Ends


IR Length : 19

IRL : GGGGCTGTACTAGATTAGCAGATATGTTACCCTCGAAATATGAAGATAAC
IRR : GGGGCTGTACTAGATTAGCCCTAAATTCCACACCAATCCCGCAGGATTTT

Insertion site


Left flankDirect repeatRight flankDR Length
CTGTTTTTGGTATATTTTTTTAGATTTAATTCACTATA0

DNA sequence

GGGGCTGTACTAGATTAGCAGATATGTTACCCTCGAAATATGAAGATAACGCACTGCAAATTAAAGAAAAAAGTACAGAAAGAACTGCTCCGTTTTTTGT
ACTGGAAGTTACCGCCCGTTCTGCCGCCGATATTTTGGGTATCCATCCCAATTCGGCAGCACTGTTCTACCGTAAAATCCGCACGGTTATCAACCATCAT
TTGGCCTTGGCTGCCGATGAGGTTTTTGAGGGCCCTGTCGAGCCGGACGAAAGCGATTTCGGCGGACGGCGTAAAGGCAGACGTGGTCGCGGTGCGGCAG
GAAAAGTGGTTGTTTTCGGCATTCTGAAACGCAACGGACGGGTCTATACCGTTGTGGTGGATAATGCCAAGTCTGAAACGTTACTCCCTGTCATCAAAAA
GAAAATCATGCCGGATAGTATTGTTTATACCGATAGTCTGAGCAGCTACGACAAGTTGGACGTGAGCGGTTTTATCCATTACCGCATCAACCATTCCAAG
GAGTGTGCAGACCGTCAGAACCACATTAACGGCATTGAGAACTTTTGGAATCAGGCAAAACGCGTCTTGCGAAAATACAACGGAATCGATCGTAAATCTT
TCCCGCTGTTCTTGAAAGAATGCGAATTTCGATTTAACTTCGGCACACCGTCTCAACAGCTTAAAATCCTGCGGGATTGGTGTGGAATTTAGGGCTAATC
TAGTACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
669 bp222 aa24692+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLPSKYEDNALQIKEKSTERTAPFFVLEVTARSAADILGIHPNSAALFYRKIRTVINHHLALAADEVFEGPVEPDESDFGGRRKGRRGRGAAGKVVVFGI
LKRNGRVYTVVVDNAKSETLLPVIKKKIMPDSIVYTDSLSSYDKLDVSGFIHYRINHSKECADRQNHINGIENFWNQAKRVLRKYNGIDRKSFPLFLKEC
EFRFNFGTPSQQLKILRDWCGI

 

Blast result :
Comments
ISNme4 is 95% aa similar to IS1016C.
References
1] Tettelin,H., Saunders,N.J., Heidelberg,J., Jeffries,A.C., Nelson,K.E., Eisen,J.A., Ketchum,K.A., Hood,D.W., Peden,J.F., Dodson,R.J., Nelson,W.C., Gwinn,M.L., DeBoy,R., Hickey,E.K., Haft,D.H., Salzberg,S.L., White,O., Fleischmann,R.D., Dougherty,B.A., Mason,T., Ciecko,A., Parksey,D.S., Blair,E.,Cittone,H., Clark,E.B., Cotton,M.D., Utterback,T.R., Khouri,H., Qin,H., Vamathevan,J., Gill,J., Scarlato,V., Masignani,V., Pizza,M., Grandi,G., Sun,L., Smith,H.O., Fraser,C.M., Moxon,E.R., Rappuoli,R. and Venter,J.C. (2000)Science 287 (5459), 1809-1815