ISKpn13

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EU780013 ND Klebsiella pneumoniae
Klebsiella pneumoniae 12836
DNA section
IS Length : 1148 bp

Ends


IR Length : 23/24

IRL : GGAAGGTGCGATTTAATCGTCATATGTGAGAACATAAAGCTTTCTTTATC
IRR : GGAAGGTGCGATTTAATCAGTCATGACGATCCAGAGCCTGGATATCCTCC

Insertion site


Left flankDirect repeatRight flankDR Length
TAATTA0

DNA sequence

GGAAGGTGCGATTTAATCGTCATATGTGAGAACATAAAGCTTTCTTTATCATGAGCTGTTTACAATGCCTGCCATTTCCAGCTATTCCTCCCGTAAATCC
CGTTTTCTTGACCGTATGAATGTTCTGGTGCCGTGGCAGGATATTGCTGATAAGCTGCTTCACGTCTATCCGTCATCCCGTCGCGGCCGACGGCCTTTCC
CCCTGGTGCTTATGCTCCGTATCCACTGCCTGCAACTCTGGTTTGACCTCAGTGACGGAGCGGCTGAAGACGCCCTGCATGATGTCCTGCCGTTCCGTCA
ATTTGCGGGGATCTGTGACACGGTGCCAGATCGCACAACCATCATGAATTTCCGCCATTTTCTGGAGAAACATCATGCAGGAGAACAGATACTGGCACTG
ATTAACCAGAAACTGAAGCAGGCCGGACTGATGTTACGTCAGGGCATCATTATCGATGCGACCATTATTTCCGCTCCCTGTTCCGTAAAAAATAAAGCCG
GTCAACGGGATCCTGAAATGCATCAGACCCGCAAGGGAAATCAGTGGTACTTTGGTATGAAAGCTCATATTGCTGTTGATGCGGCCACAGGCTTGACGGA
AAAAGTAGTGACCACGGCGGCAAATGTGCATGACCTGAATGCGGCGGATAGCCTGATTACGGAGCCGGTAGCAATTGTCTTCGCCGATGCCGGATATCGC
GGGGCAGAAAAACGGGACTCTCTGACACATCGGGTTAAAGAGTGGTTTATTGCCAAAGGTCCTCATGCCGTAAAAAAGCTCAGACAGCATCCCCGGCTGA
ATAAGCAGGCGCTGCATGATGAATATGTGAAAGCAGGTATTAGGGCAAAGGTTGAGCATCCTTTCCGGATACTGAAGTGCCAGTTTGGTTTCAGCAAAAC
ACGATTACGGGGACTGATGAAGAACCACAACCGGCTTTCAATGCTGTTTGCAATGTGCAATTTGGTGCGGGCGGGACAACTGGCGGGGATGTCGTGAAAA
TCATTGTAATATCAGTGGAGCAGTGACATTTTGCTTACCCTGAGTTGATGGGGGAGATTAAATATTGTCCAAACTGGGGTGCTTACTTTGCCGCGTAAGG
AGGATATCCAGGCTCTGGATCGTCATGACTGATTAAATCGCACCTTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa65997+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPAISSYSSRKSRFLDRMNVLVPWQDIADKLLHVYPSSRRGRRPFPLVLMLRIHCLQLWFDLSDGAAEDALHDVLPFRQFAGICDTVPDRTTIMNFRHFL
EKHHAGEQILALINQKLKQAGLMLRQGIIIDATIISAPCSVKNKAGQRDPEMHQTRKGNQWYFGMKAHIAVDAATGLTEKVVTTAANVHDLNAADSLITE
PVAIVFADAGYRGAEKRDSLTHRVKEWFIAKGPHAVKKLRQHPRLNKQALHDEYVKAGIRAKVEHPFRILKCQFGFSKTRLRGLMKNHNRLSMLFAMCNL
VRAGQLAGM

 

Blast result :
Comments
ISKpn13 is 70% aa similar to ISVch5.
References
1] Márquez, C., Labbate, M., Raymondo, C., Fernández, J., Gestal, A. M., Holley, M., Borthagaray, Stokes, H. W. (2008). J. Clin. Microbiol. 46 (10), 3417-3425