ISAzo23
- Family IS5
- Group IS1031
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_006513 | ND | Azoarcus sp. | Azoarcus sp. EbN1
Aromatoleum aromaticum EbN1 |
DNA section
IS Length : 871 bp
Ends
IR Length : 17
IRL : GAGCGTGTTATGAACTTATGCAGCTGATATAGTTGATGTTTTTTGATCAC
IRR : GAGCGTGTTATGAACTTGCTTCCAGTGCCAGCCAGAACGCGGCCTTGGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGACACGCTC | TA | GGCTTGACTG | 2 |
| CGCGCCGACC | TA | GGCCGCTTCG | 2 |
DNA sequence
GAGCGTGTTATGAACTTATGCAGCTGATATAGTTGATGTTTTTTGATCACTGTGAGCAGAAAACCCTACCCGAGCGATGTCAGTGAAGAGGAGTGGCATT
TCGTGGCGCCGTATCTGACGCTGATGACCGAGCAGGCGCCGCAGCGCAGCTACCCCTTGCGCGAAGTGTTCAACGCGTTGCGCTGGCTGGCTCGGGCCGG
CGCGCCATGGCGACTCTTGCCGAATGATTTTCCGCCCTGGCAGATGGTGTATCAGCAGTTTCGCCGCTGGAACGATGCGGGCTGTTTCGAGGCGATGGTG
AGCGACATGCGTTCGATCATCCGAGTCGGCGACGGTCGCAAGGCCCAGCCCAGTGCCGTGATCCTCGATGGGCGAACGCTGCAAAGCAGCTGCGAAAGCG
GGCCGCGGGCCGGCTACGACGGCTACAAGCGGCGTCGGGGCAGCAAAGTACATATGGCCGTGGATACGCTGGGGCAACTCATTGCGCTGACCGTCACGCC
GGCCAATGAACAGGAGCGCGCGCAGGTCAAGGACCTGTGCGAGGCGGTGCAGCAAGCCACGGGCGAAACGGTCAAAGTGGCGTGGGCCGACCAGGGCTAC
ACGGGCGACGAAGCTCGGAAAGCGGCCAAGGCGGCGGGTATCGATCTTCAAATCGTCAAACTTCCCGAGGCGAAGAAGGGATTTGTATTGCTGCCCCGGC
GCTGGGTCGTCGAGCGCAGTTTCGGGTGGCTGTCCCGATTCAGACGACTGAGTCGGGATTTCGAGCGGATGCCGCAAGTGCTGGCCGGATTGCATTTCGT
CGTCTTCTGCATCCTCATGCTGCCCAAGGCCGCGTTCTGGCTGGCACTGGAAGCAAGTTCATAACACGCTC
TCGTGGCGCCGTATCTGACGCTGATGACCGAGCAGGCGCCGCAGCGCAGCTACCCCTTGCGCGAAGTGTTCAACGCGTTGCGCTGGCTGGCTCGGGCCGG
CGCGCCATGGCGACTCTTGCCGAATGATTTTCCGCCCTGGCAGATGGTGTATCAGCAGTTTCGCCGCTGGAACGATGCGGGCTGTTTCGAGGCGATGGTG
AGCGACATGCGTTCGATCATCCGAGTCGGCGACGGTCGCAAGGCCCAGCCCAGTGCCGTGATCCTCGATGGGCGAACGCTGCAAAGCAGCTGCGAAAGCG
GGCCGCGGGCCGGCTACGACGGCTACAAGCGGCGTCGGGGCAGCAAAGTACATATGGCCGTGGATACGCTGGGGCAACTCATTGCGCTGACCGTCACGCC
GGCCAATGAACAGGAGCGCGCGCAGGTCAAGGACCTGTGCGAGGCGGTGCAGCAAGCCACGGGCGAAACGGTCAAAGTGGCGTGGGCCGACCAGGGCTAC
ACGGGCGACGAAGCTCGGAAAGCGGCCAAGGCGGCGGGTATCGATCTTCAAATCGTCAAACTTCCCGAGGCGAAGAAGGGATTTGTATTGCTGCCCCGGC
GCTGGGTCGTCGAGCGCAGTTTCGGGTGGCTGTCCCGATTCAGACGACTGAGTCGGGATTTCGAGCGGATGCCGCAAGTGCTGGCCGGATTGCATTTCGT
CGTCTTCTGCATCCTCATGCTGCCCAAGGCCGCGTTCTGGCTGGCACTGGAAGCAAGTTCATAACACGCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 813 bp | 270 aa | 52 | 864 | + | No |
Description :
ORF sequence :
VSRKPYPSDVSEEEWHFVAPYLTLMTEQAPQRSYPLREVFNALRWLARAGAPWRLLPNDFPPWQMVYQQFRRWNDAGCFEAMVSDMRSIIRVGDGRKAQP
SAVILDGRTLQSSCESGPRAGYDGYKRRRGSKVHMAVDTLGQLIALTVTPANEQERAQVKDLCEAVQQATGETVKVAWADQGYTGDEARKAAKAAGIDLQ
IVKLPEAKKGFVLLPRRWVVERSFGWLSRFRRLSRDFERMPQVLAGLHFVVFCILMLPKAAFWLALEASS
SAVILDGRTLQSSCESGPRAGYDGYKRRRGSKVHMAVDTLGQLIALTVTPANEQERAQVKDLCEAVQQATGETVKVAWADQGYTGDEARKAAKAAGIDLQ
IVKLPEAKKGFVLLPRRWVVERSFGWLSRFRRLSRDFERMPQVLAGLHFVVFCILMLPKAAFWLALEASS
Blast result :
Comments
ISAzo23 is 74% aa similar to ISDge7.
References
1] Kuhner,S., Wohlbrand,L., Fritz,I., Wruck,W., Hultschig,C., Hufnagel,P., Kube,M., Reinhardt,R. and Rabus,R. (2005) J. Bacteriol. 187 (4), 1493-1503.
2] Rabus,R., Kube,M., Heider,J., Beck,A., Heitmann,K., Widdel,F. and Reinhardt,R. (2005) Arch. Microbiol. 183 (1), 27-36.
3] PROSCIENCE (2004) Direct Submission GenBank.
4] ISfinder annotation (2008)
2] Rabus,R., Kube,M., Heider,J., Beck,A., Heitmann,K., Widdel,F. and Reinhardt,R. (2005) Arch. Microbiol. 183 (1), 27-36.
3] PROSCIENCE (2004) Direct Submission GenBank.
4] ISfinder annotation (2008)