ISAcma5
- Family IS5
- Group IS1031
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009925 | ND | Acaryochloris marina | Acaryochloris marina MBIC11017 plasmid pREB3 Acaryochloris marina MBIC11017 plasmid pREB8 Acaryochloris marina MBIC11017 plasmid pREB2 Acaryochloris marina MBIC11017 |
DNA section
IS Length : 898 bp
Ends
IR Length : 17
IRL : GAGGCTGTTTGAGAAGTGAGTAAAGCTCTCAAGGTACTAATCTGTCAATA
IRR : GAGGCTGTTTGAGAAGTTTTAGTGCTCCTGCGCTAGCCTTCGAACCATGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTGACTTGAAACTTTAGGACCAGGAGT | TCA | CTTTTCTACAGTAAAGCGGCTGCTCTT | 3 |
| AACCCATAACCTGCTTCCAAAACACCT | TCA | TTACTCCCCTAGCCGCCCCATCCTCTT | 3 |
| GTGGCGAAATCATAATCATGGTTTATC | TTA | GATGAGGCCGCCTATTCAACCTCCTGG | 3 |
| AAGCTGTGTTGAAATGAACCAGCATTT | TCA | GATTGTGAGCTATTTGAATGGGCAAAG | 3 |
| CGATACTGCCGTCAATCGGACTTTTGC | TAA | GCAGAAGGCTTCCCAAATCGAGCTGGA | 3 |
| TGATTACACTTTATCGGCAGTCACAAG | TAA | GCTCTACCGAATAATTACGGAGTGCAA | 3 |
| TATTTCAAAATACCGAACTGGGTGCCT | TGA | GGAGACTAAGCGGACAAGCTGAGCACA | 3 |
| TGGTGCATGATAGTTCAGGACAAACTT | TAA | GACAGGATCGACGGGAATACCAAATTT | 3 |
| AGCAATAATGAGTTGTGTAACTTCCTC | TAA | GTTATTGCCGATAGTTTGGGAAAAGTT | 3 |
DNA sequence
GAGGCTGTTTGAGAAGTGAGTAAAGCTCTCAAGGTACTAATCTGTCAATACACAAACACTGGACAGGACCTAGAGAGCAATGCCTACAGCATATGATAGC
GACCTCACCACCCTGCAATGGGAATTACTTGAGCCTTTGATTCCTGCCGCTAAACCTGGAGGTAGACCTCGCACCACTGATATGCTCAGTGTTCTCAATG
CCATTTTTTATCTTGTGGTTACGGGTTGTCAGTGGAGACAACTACCCCATGATTTTCCCTGTTGGTCAACGGTCTATAGCTATTTTCGAAGGTGGCGCGA
TGATGGGACTTGGGTCCACATCAATGAACATCTGCGCATGCAAGAGCGGGTGAGTGAAGACCGTCATCCAAGTCCCAGTGCCGCCATCTGCGATGCTCAA
TCGGTTAAAGTCGGCAATCCTCGGTGTCACTCGATTGGGTTTGATGGTGGGAAAATGGTCAAAGGTCGTAAACGTCATGTGCTCGTTGATACTTTAGGGC
TGGTTTTGATGGTGATGGTCACTGCTGCCAATATCTCTGACCAACGAGGGGCCAAAATACTGTTTTGGAAAGCTCGACGCCAAGGTGCGAGTTTGTCCCG
TCTAGTTCGCATATGGGCCGATGCTGGCTATCAAGGACAAGCTTTGATGAAGTGGGTAATGGACCGTTTTCAATATGTCTTGGAAGTAGTCAAACGCTCA
GATAATCTTGCGGGGTTTCAGGTTGTTTCCAAACGATGGATTGTAGAACGGACGTTTGGATGGTTGTTGTGGTCTCGACGTCTTAATAAAGATTATGAGG
TGCTGACCAGAACAGCTGAAGCGCTCGCATATGTGGCGATGATTCGACTCATGGTTCGAAGGCTAGCGCAGGAGCACTAAAACTTCTCAAACAGCCTC
GACCTCACCACCCTGCAATGGGAATTACTTGAGCCTTTGATTCCTGCCGCTAAACCTGGAGGTAGACCTCGCACCACTGATATGCTCAGTGTTCTCAATG
CCATTTTTTATCTTGTGGTTACGGGTTGTCAGTGGAGACAACTACCCCATGATTTTCCCTGTTGGTCAACGGTCTATAGCTATTTTCGAAGGTGGCGCGA
TGATGGGACTTGGGTCCACATCAATGAACATCTGCGCATGCAAGAGCGGGTGAGTGAAGACCGTCATCCAAGTCCCAGTGCCGCCATCTGCGATGCTCAA
TCGGTTAAAGTCGGCAATCCTCGGTGTCACTCGATTGGGTTTGATGGTGGGAAAATGGTCAAAGGTCGTAAACGTCATGTGCTCGTTGATACTTTAGGGC
TGGTTTTGATGGTGATGGTCACTGCTGCCAATATCTCTGACCAACGAGGGGCCAAAATACTGTTTTGGAAAGCTCGACGCCAAGGTGCGAGTTTGTCCCG
TCTAGTTCGCATATGGGCCGATGCTGGCTATCAAGGACAAGCTTTGATGAAGTGGGTAATGGACCGTTTTCAATATGTCTTGGAAGTAGTCAAACGCTCA
GATAATCTTGCGGGGTTTCAGGTTGTTTCCAAACGATGGATTGTAGAACGGACGTTTGGATGGTTGTTGTGGTCTCGACGTCTTAATAAAGATTATGAGG
TGCTGACCAGAACAGCTGAAGCGCTCGCATATGTGGCGATGATTCGACTCATGGTTCGAAGGCTAGCGCAGGAGCACTAAAACTTCTCAAACAGCCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 801 bp | 266 aa | 80 | 880 | + | No |
Chemistry : DDE
ORF sequence :
MPTAYDSDLTTLQWELLEPLIPAAKPGGRPRTTDMLSVLNAIFYLVVTGCQWRQLPHDFPCWSTVYSYFRRWRDDGTWVHINEHLRMQERVSEDRHPSPS
AAICDAQSVKVGNPRCHSIGFDGGKMVKGRKRHVLVDTLGLVLMVMVTAANISDQRGAKILFWKARRQGASLSRLVRIWADAGYQGQALMKWVMDRFQYV
LEVVKRSDNLAGFQVVSKRWIVERTFGWLLWSRRLNKDYEVLTRTAEALAYVAMIRLMVRRLAQEH
AAICDAQSVKVGNPRCHSIGFDGGKMVKGRKRHVLVDTLGLVLMVMVTAANISDQRGAKILFWKARRQGASLSRLVRIWADAGYQGQALMKWVMDRFQYV
LEVVKRSDNLAGFQVVSKRWIVERTFGWLLWSRRLNKDYEVLTRTAEALAYVAMIRLMVRRLAQEH
Blast result :
Comments
ISAcma5 is 67% aa similar to ISMac15.
References
1] ISfinder annotation (2008)
2] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C., Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S., Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W.(2008) Proc. Natl. Acad. Sci. U.S.A.
2] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C., Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S., Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W.(2008) Proc. Natl. Acad. Sci. U.S.A.