ISAar1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1217 bp

Ends


IR Length : 24

IRL : AAGGGGTATCCATTTAGTGGCCGATATCAGGAGTACGATCAGAAGCTAAG
IRR : AAGGGGTATCCATTTAGTGGCCGAGGGAAAAACGCTATTCTAGCGTTGCC

Insertion site


Left flankDirect repeatRight flankDR Length
TTCGTAACAATTACTTCAAATACGGCTC8
GTCGTTTTATTTCAGAAAATACAGAACG8
GTCGCATCATTTATCGAAATATGTCATC8
TTCACTACATTTCATTTAATTGAATTCA8
ACCCAAACAATTTCTGAATTGAAGTTCC8

DNA sequence

AAGGGGTATCCATTTAGTGGCCGATATCAGGAGTACGATCAGAAGCTAAGAAACTCCCGCGCTGCGTCAACAGTCGGGAGCATGGACTACACACCGTGGA
GGGGTGTTCGTCATGACTCAGCCTACCCCTGAATCGACAGGAAACCGACCGCTGGCCGGGCGGGACTACCCGGCAGATCTTGCCCAGCTGCTTGCTTGGT
TTTCCGACGATGAATCCTGCGTGGACTACTTGCAGTGGCTACGCTGGCCGGAGGGGATCTGTTGCCCTCGATGCCTTAGCGCGTTCGTGAACAACGAGCC
TGATAATCGCTTTCGCTGTAAGAAGTGCTGGTACCGCTTCTCTGCTACCGCTGGCACCATCTTCGACAAGACCCGCACGCCGCTGACCGTGTGGTTCCAA
ACCGCGTGGTTGATGACCGCAGGAAAGAGCGGAGTCTGCGCGGCGCATCTGCACCGTGTGCTGCCAATATCTTCGTATCAGACTGCCTGGAGCATGCTGG
GCAAGTTGCGTAGTGTCATGAGCACGCAAGACAGCTCGTTGCTCTCTGGGCGGGTCGAAGTCGATGAAAGTTTCTTCGGTGGCCATCGCCCTGGTCGCAC
AGGACGTGGTGCGGCAGGAAAGACTCTGGTGGCGGGCGCGATTGAAATTGCAGATGATGGGTGGGGGCGAGCGCGGTTGGCGATCATCCCTGATGCTTCG
GCTGCATCGTTGCGTGAGTTCATCGCCGCGAATATTGCTCCTGGCTCCACGATTGTTTCTGACGGGTGGAGGGGATATGGAAACGCGGTGGAAGGGTATG
CGCATGAACCGGTGAGTGTCTGGAAATCAGGGCTTGAAGCGCATGCTTCGCTGCCGGCCGTGCACCGATTGTTTGCGTTGGTGAAAAGGATGATCGAAGG
GACTTACCAGGGCTCGGGCAGCGTGGGGCACTTGCAGGAGTATCTGGATGAGTTCGTTTTTCGGTTCAACCGTAGGCACAGTACCCATCGGGGACTTGTG
TTCATGCGCTTGCTCGAGCGCGCAGTGAAGCGAGGTCCAGTAACCTATCGGAACCTGGTGCGTAAGCCGGAGCCGAAGGCTGTTCATCCTCGCGGTGTTT
CCGGACCGCATGCCCTGCCCGGGTCGATGGAGCGGGAGGCCTCGGAGCGGCCGTGGCGATCACCTCGGGCAACGCTAGAATAGCGTTTTTCCCTCGGCCA
CTAAATGGATACCCCTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1071 bp356 aa1131183+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTQPTPESTGNRPLAGRDYPADLAQLLAWFSDDESCVDYLQWLRWPEGICCPRCLSAFVNNEPDNRFRCKKCWYRFSATAGTIFDKTRTPLTVWFQTAWL
MTAGKSGVCAAHLHRVLPISSYQTAWSMLGKLRSVMSTQDSSLLSGRVEVDESFFGGHRPGRTGRGAAGKTLVAGAIEIADDGWGRARLAIIPDASAASL
REFIAANIAPGSTIVSDGWRGYGNAVEGYAHEPVSVWKSGLEAHASLPAVHRLFALVKRMIEGTYQGSGSVGHLQEYLDEFVFRFNRRHSTHRGLVFMRL
LERAVKRGPVTYRNLVRKPEPKAVHPRGVSGPHALPGSMEREASERPWRSPRATLE

 

Blast result :
Comments
ISAar1 is 63% aa similar to ISCARN11.
References
1] ISfinder annotation (2009).