ISNosp1
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008697 | ND | Nocardioides sp. | Nocardioides sp. JS614 plasmid pNOCA01 |
DNA section
IS Length : 1678 bp
Ends
IR Length : 21/23
IRL : CCTCGATCCGTGGAACCACGGGGGGTGAGCGGCGTCGGTGCGGCGCGGCG
IRR : CCTCGATCCGTGGAACGACTGGGCTGGCGGCGCGTGAGTCGGCTCGAGTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGGAGTCGCG | CTTAG | GAACAGGCGG | 5 |
DNA sequence
CCTCGATCCGTGGAACCACGGGGGGTGAGCGGCGTCGGTGCGGCGCGGCGGACGTAGAAGTGCCTTCTGGGGCAGAAGAATCGGAATTGTCTAGGTTCCT
GTTCGTTCCGCACCGAGAAGGCACTCGAAGTGAATCTATCCGATGGTTGGTCTCGGGCCACCGTGTTGTTCGATGACGAGCGCTTGGTGTCGTCGGTGGG
GCTGGTGCCGGTGATGGCGCTGGCCGAGCAGGCCGGCCTCTCCGAGCTGGTCGCCGACCGGGTCACCTTGGCCTCGCTCTCGCCGCGGGTGGCCTCGGCG
GGGGTGAACCCGGCCGGGAAGGTGACCTCGATCATCGCGGGGATGGCCGCGGGCGCGGACAACATCGACGAGTTGCAGGTGATCCGCTCCGGCGGGATGA
AGCGACTCTTCGACCAGGTGTACGCGCCGGCCACGCTGGGCCAGTTCCTGCGCGAGTTCACCCACGGCCACACCTTGCAGCTGGCCTCGGTCGCCCGGGC
CCACCTGGTCCACCTGGCGGCCCGGACCAACCTGCTGCCCGGCATCGAGTCCCAGGCCTACGTCGACATCGACTCGCTGCTGCGCCCGGTCTACGGGCAC
GCCAAACAGGGCGCCAGCTTCGGGCACACCAAGATCGCCGGCAAGCAGGTGCTCCGTAAGGGTCTCTCGCCGCTGGCGACCACGATCAGCACCGCCCAAG
GGGCTCCGGTGCTGGCCGGGATCCGGCTGCGTGGCGGGAAGACCGGCTCTGGCAAGGGCGCGGCCTCGATGGTCCGCGAGGCGATCAAGACTGCTCGCGA
CTGCGGTGCCACCGGCGAGATCCTGGTGCGTGGTGACTCCGCCTACGGCAACAGCGCAGTCGTGGCCGCGTGCCTGAAGGCAGGCGTCCGGTTCTCGCTC
GTGCTCACCAAGAACCCGGCGGTGTCCGCCGCAATCGGCTCCATCCCCGAGGACGCCTGGACCCCGGTCACCTACCCCGGAGCCGTGATCGATCCGGACA
CCGGGGAGCTGATCAGCGACGCGCAGGTCGCCGAGGTCGAGTTCACCGCGTTCGCCTCCACCGAGCACCCGGTCACCGCCAGGCTGGTGGTGCGGCGGGT
CCGCGACCGCGCCAAGCTCGACGAGCTGTTCCCGGTCTGGCGATACCACCCGTTCCTCACCAACAGCACGCAGCCGACCGTGCAGGCCGACCTGATCCAC
CGGCGGCACGCGATCATCGAGACCGTCTTCGCCGACCTGATCGACGGGCCCCTGGCGCACATGCCCTCGGGACGGTTCGCGTCCAACAGTGCATGGGCGA
TCTGCGCGATGATCACCCACAACCTGCTCCGCGCCGCCGACACCCTCGACCCCCACGCCGCTGCACCCGCGCGAGGCGCGACGCTGCGCCGCCAGATCAT
CCACGTCCCAGCCCGGCTCGCCCGCCCGCAACGCCGCCATGTGCTGCACCTGCCCGCGCACTGGCCCTGGGCGAACCGCTGGCTGCGGATCTGGACCGGC
GTGTTCAGCCCCGCCCAAGCGCCACCACGCGCGGCCTGACCCGTCCACCGCCGATAGGCCCGAGGAAACCGCCACGTGGAAAGGCTGGGCAGACCAGCAC
CACTGTCACGTCCTCATGCCCCCGACCCCACTCGAGCCGACTCACGCGCCGCCAGCCCAGTCGTTCCACGGATCGAGG
GTTCGTTCCGCACCGAGAAGGCACTCGAAGTGAATCTATCCGATGGTTGGTCTCGGGCCACCGTGTTGTTCGATGACGAGCGCTTGGTGTCGTCGGTGGG
GCTGGTGCCGGTGATGGCGCTGGCCGAGCAGGCCGGCCTCTCCGAGCTGGTCGCCGACCGGGTCACCTTGGCCTCGCTCTCGCCGCGGGTGGCCTCGGCG
GGGGTGAACCCGGCCGGGAAGGTGACCTCGATCATCGCGGGGATGGCCGCGGGCGCGGACAACATCGACGAGTTGCAGGTGATCCGCTCCGGCGGGATGA
AGCGACTCTTCGACCAGGTGTACGCGCCGGCCACGCTGGGCCAGTTCCTGCGCGAGTTCACCCACGGCCACACCTTGCAGCTGGCCTCGGTCGCCCGGGC
CCACCTGGTCCACCTGGCGGCCCGGACCAACCTGCTGCCCGGCATCGAGTCCCAGGCCTACGTCGACATCGACTCGCTGCTGCGCCCGGTCTACGGGCAC
GCCAAACAGGGCGCCAGCTTCGGGCACACCAAGATCGCCGGCAAGCAGGTGCTCCGTAAGGGTCTCTCGCCGCTGGCGACCACGATCAGCACCGCCCAAG
GGGCTCCGGTGCTGGCCGGGATCCGGCTGCGTGGCGGGAAGACCGGCTCTGGCAAGGGCGCGGCCTCGATGGTCCGCGAGGCGATCAAGACTGCTCGCGA
CTGCGGTGCCACCGGCGAGATCCTGGTGCGTGGTGACTCCGCCTACGGCAACAGCGCAGTCGTGGCCGCGTGCCTGAAGGCAGGCGTCCGGTTCTCGCTC
GTGCTCACCAAGAACCCGGCGGTGTCCGCCGCAATCGGCTCCATCCCCGAGGACGCCTGGACCCCGGTCACCTACCCCGGAGCCGTGATCGATCCGGACA
CCGGGGAGCTGATCAGCGACGCGCAGGTCGCCGAGGTCGAGTTCACCGCGTTCGCCTCCACCGAGCACCCGGTCACCGCCAGGCTGGTGGTGCGGCGGGT
CCGCGACCGCGCCAAGCTCGACGAGCTGTTCCCGGTCTGGCGATACCACCCGTTCCTCACCAACAGCACGCAGCCGACCGTGCAGGCCGACCTGATCCAC
CGGCGGCACGCGATCATCGAGACCGTCTTCGCCGACCTGATCGACGGGCCCCTGGCGCACATGCCCTCGGGACGGTTCGCGTCCAACAGTGCATGGGCGA
TCTGCGCGATGATCACCCACAACCTGCTCCGCGCCGCCGACACCCTCGACCCCCACGCCGCTGCACCCGCGCGAGGCGCGACGCTGCGCCGCCAGATCAT
CCACGTCCCAGCCCGGCTCGCCCGCCCGCAACGCCGCCATGTGCTGCACCTGCCCGCGCACTGGCCCTGGGCGAACCGCTGGCTGCGGATCTGGACCGGC
GTGTTCAGCCCCGCCCAAGCGCCACCACGCGCGGCCTGACCCGTCCACCGCCGATAGGCCCGAGGAAACCGCCACGTGGAAAGGCTGGGCAGACCAGCAC
CACTGTCACGTCCTCATGCCCCCGACCCCACTCGAGCCGACTCACGCGCCGCCAGCCCAGTCGTTCCACGGATCGAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1329 bp | 442 aa | 211 | 1539 | + | No |
Chemistry : DDE
ORF sequence :
MMALAEQAGLSELVADRVTLASLSPRVASAGVNPAGKVTSIIAGMAAGADNIDELQVIRSGGMKRLFDQVYAPATLGQFLREFTHGHTLQLASVARAHLV
HLAARTNLLPGIESQAYVDIDSLLRPVYGHAKQGASFGHTKIAGKQVLRKGLSPLATTISTAQGAPVLAGIRLRGGKTGSGKGAASMVREAIKTARDCGA
TGEILVRGDSAYGNSAVVAACLKAGVRFSLVLTKNPAVSAAIGSIPEDAWTPVTYPGAVIDPDTGELISDAQVAEVEFTAFASTEHPVTARLVVRRVRDR
AKLDELFPVWRYHPFLTNSTQPTVQADLIHRRHAIIETVFADLIDGPLAHMPSGRFASNSAWAICAMITHNLLRAADTLDPHAAAPARGATLRRQIIHVP
ARLARPQRRHVLHLPAHWPWANRWLRIWTGVFSPAQAPPRAA
HLAARTNLLPGIESQAYVDIDSLLRPVYGHAKQGASFGHTKIAGKQVLRKGLSPLATTISTAQGAPVLAGIRLRGGKTGSGKGAASMVREAIKTARDCGA
TGEILVRGDSAYGNSAVVAACLKAGVRFSLVLTKNPAVSAAIGSIPEDAWTPVTYPGAVIDPDTGELISDAQVAEVEFTAFASTEHPVTARLVVRRVRDR
AKLDELFPVWRYHPFLTNSTQPTVQADLIHRRHAIIETVFADLIDGPLAHMPSGRFASNSAWAICAMITHNLLRAADTLDPHAAAPARGATLRRQIIHVP
ARLARPQRRHVLHLPAHWPWANRWLRIWTGVFSPAQAPPRAA
Blast result :
Comments
ISNosp1 is 59% aa similar to ISBli4.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mattes,T., Gossett,J. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mattes,T., Gossett,J. and Richardson,P. (2006) Direct submission GenBank.