ISNml2
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013235 | ND | Nakamurella multipartita | Nakamurella multipartita DSM 44233 |
DNA section
IS Length : 1689 bp
Ends
IR Length : 10/15
IRL : CCTGCCGCTTTCATCGTAATTCTGATCGGCAGAGTGTTGATCATGAGGAA
IRR : CCTCGATCTTTCTTCCGGTGGTCGGGCGGCCTCGTAGCCGTTCCTCATGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAGAGTTCGGTGTTAG | CTAGGCTGCCCGATCG | 0 | |
| CAGCCCGGGCGGCCCA | CTAG | ATCGGCTCCAGCCGTG | 4 |
| GGAGTGGTCGGGTGCG | CTAA | CTGTGCGCCGGGCCGG | 4 |
DNA sequence
CCTGCCGCTTTCATCGTAATTCTGATCGGCAGAGTGTTGATCATGAGGAAAGGTGCTCTGACCTGGGAAGATAGGTCTTGCTGAGGGACCAATCGAACCA
GAACCAGGAGCACCTTTCCGATGCGGAAGTCTACCGGGCTGTACCCGTCGCTCCGAGTCGATGCCACCGGCAAGCGGGTGGTGTCCCACGGCGGGTCGGT
GCTGCTGGCCTTGGCCGCGGACAGGGTCGGTTTGGGTCGTGGGTTGTCGGCGGCGTTGAGGCCGTGGCGCAAGCCGATGGCGGTGCACGACCCGGGCAAG
ATCCTGCTCGACCTGGCGATCTCGCTGGCGATCGGCGGTGACTGCCTGGCCGACATCGCCCAACTGCGGGCCGAGCCCGCCGTGTTCGGTCATGTGGCGT
CCGACCCGACTGTGTCCCGGCTGATCGACACCCTCGCCTCGGACGCGACGGCAGCGCTGAAGGCGATCGACACCGCGCGGGCGGCAGCCCGCGCCCGGGC
GTGGAAGCTGGCCGGACCCGCCGCACCGAACCATGACCGGTCGGCGAAGGCGCCGCTGGTCGTCGACGTGGACGCCACCCTGGTCACCGCGCACTCCGAA
AAGCAGCTGGCAGCAGCAACATTCAAGAAGGGCTTCGGGTTCCACCCGATCGGCGCGTGGGCCGACCACGGCCCGGACGGCACCGGTGAACCCCTGGCGA
TGCTGCTGAGGCCGGGCAACGCCGGCTCCAACACCGCAGCCGACCACATCAGCGTGGTCAAGGCCGCGCTCGCGCAACTGCCCTGCACCACGGCGGACCG
ACGGCCCGGCCGCGGTGTGCTGGTCCGCACCGACGGGGCCGGCGGAACCCACGAGTTCGTGGACTGGATGGCCCGGCAACGGGTCCAGTACTCGGTCGGG
TTCACCCTGACCACCGACATCACCGCCAAGGTCGACGCCCTGCCGGAGGCGGCGTGGACACCCGCGTACAACGCCGACCAGGAGCCCCGGGACGGGGCCT
GGGTGGCCGAACTGACCGGGGTCCTCAAGCTCAAGGGCTGGCCCAAGGACATGCGGGTCATCGTCCGCGCCGAACGACCCCATCCCGGTGCCCAGCTGAA
GTTCACCGACTCGAACGGCAACCGGCTCACCGCGTTCGCCACGAACACCAAAGGCGGACAGCTCGCGGATCTGGAACTGCGGCATCGGCGCCGCGCCCGC
TGCGAGGACCGGATCCGCAACTCGAAGGACACCGGCCTGAACAACCTGCCCCTCAACGACTTTGCCCAGAATCAAGTGTGGATCGCGGTCGTGCAACTGG
CCACCGAACTGACCGCATGGATGCAGATGCTCGCCTTCACCGGCACCCCGGCGCGGACCTGGGAGCCCAAGAAGCTGCGGCACCGACTGTTCAGCGTCGC
CGCCCGGATCGGCCGCAAAGCCCGCCGTACCTGGCTCCGCCTGTCCGCGCACGCACCCCACCGCGACCTCCTCCTGCACGGCCTGGCCCGGCTGCGGAAC
CTGCCGCAACTGACCTGACCCACCGACCCGACCACCATCTCCGACCAAGGACCCGAACCGGGCAGTGGAACCCGGCGCCCACCCAGGCGACCACGGGTTC
AGCAGCCAACCCATGATCAACAGAGGAGGACAAAAATGATCATGAGGAACGGCTACGAGGCCGCCCGACCACCGGAAGAAAGATCGAGG
GAACCAGGAGCACCTTTCCGATGCGGAAGTCTACCGGGCTGTACCCGTCGCTCCGAGTCGATGCCACCGGCAAGCGGGTGGTGTCCCACGGCGGGTCGGT
GCTGCTGGCCTTGGCCGCGGACAGGGTCGGTTTGGGTCGTGGGTTGTCGGCGGCGTTGAGGCCGTGGCGCAAGCCGATGGCGGTGCACGACCCGGGCAAG
ATCCTGCTCGACCTGGCGATCTCGCTGGCGATCGGCGGTGACTGCCTGGCCGACATCGCCCAACTGCGGGCCGAGCCCGCCGTGTTCGGTCATGTGGCGT
CCGACCCGACTGTGTCCCGGCTGATCGACACCCTCGCCTCGGACGCGACGGCAGCGCTGAAGGCGATCGACACCGCGCGGGCGGCAGCCCGCGCCCGGGC
GTGGAAGCTGGCCGGACCCGCCGCACCGAACCATGACCGGTCGGCGAAGGCGCCGCTGGTCGTCGACGTGGACGCCACCCTGGTCACCGCGCACTCCGAA
AAGCAGCTGGCAGCAGCAACATTCAAGAAGGGCTTCGGGTTCCACCCGATCGGCGCGTGGGCCGACCACGGCCCGGACGGCACCGGTGAACCCCTGGCGA
TGCTGCTGAGGCCGGGCAACGCCGGCTCCAACACCGCAGCCGACCACATCAGCGTGGTCAAGGCCGCGCTCGCGCAACTGCCCTGCACCACGGCGGACCG
ACGGCCCGGCCGCGGTGTGCTGGTCCGCACCGACGGGGCCGGCGGAACCCACGAGTTCGTGGACTGGATGGCCCGGCAACGGGTCCAGTACTCGGTCGGG
TTCACCCTGACCACCGACATCACCGCCAAGGTCGACGCCCTGCCGGAGGCGGCGTGGACACCCGCGTACAACGCCGACCAGGAGCCCCGGGACGGGGCCT
GGGTGGCCGAACTGACCGGGGTCCTCAAGCTCAAGGGCTGGCCCAAGGACATGCGGGTCATCGTCCGCGCCGAACGACCCCATCCCGGTGCCCAGCTGAA
GTTCACCGACTCGAACGGCAACCGGCTCACCGCGTTCGCCACGAACACCAAAGGCGGACAGCTCGCGGATCTGGAACTGCGGCATCGGCGCCGCGCCCGC
TGCGAGGACCGGATCCGCAACTCGAAGGACACCGGCCTGAACAACCTGCCCCTCAACGACTTTGCCCAGAATCAAGTGTGGATCGCGGTCGTGCAACTGG
CCACCGAACTGACCGCATGGATGCAGATGCTCGCCTTCACCGGCACCCCGGCGCGGACCTGGGAGCCCAAGAAGCTGCGGCACCGACTGTTCAGCGTCGC
CGCCCGGATCGGCCGCAAAGCCCGCCGTACCTGGCTCCGCCTGTCCGCGCACGCACCCCACCGCGACCTCCTCCTGCACGGCCTGGCCCGGCTGCGGAAC
CTGCCGCAACTGACCTGACCCACCGACCCGACCACCATCTCCGACCAAGGACCCGAACCGGGCAGTGGAACCCGGCGCCCACCCAGGCGACCACGGGTTC
AGCAGCCAACCCATGATCAACAGAGGAGGACAAAAATGATCATGAGGAACGGCTACGAGGCCGCCCGACCACCGGAAGAAAGATCGAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1398 bp | 465 aa | 121 | 1518 | + | No |
Chemistry : DDE
ORF sequence :
MRKSTGLYPSLRVDATGKRVVSHGGSVLLALAADRVGLGRGLSAALRPWRKPMAVHDPGKILLDLAISLAIGGDCLADIAQLRAEPAVFGHVASDPTVSR
LIDTLASDATAALKAIDTARAAARARAWKLAGPAAPNHDRSAKAPLVVDVDATLVTAHSEKQLAAATFKKGFGFHPIGAWADHGPDGTGEPLAMLLRPGN
AGSNTAADHISVVKAALAQLPCTTADRRPGRGVLVRTDGAGGTHEFVDWMARQRVQYSVGFTLTTDITAKVDALPEAAWTPAYNADQEPRDGAWVAELTG
VLKLKGWPKDMRVIVRAERPHPGAQLKFTDSNGNRLTAFATNTKGGQLADLELRHRRRARCEDRIRNSKDTGLNNLPLNDFAQNQVWIAVVQLATELTAW
MQMLAFTGTPARTWEPKKLRHRLFSVAARIGRKARRTWLRLSAHAPHRDLLLHGLARLRNLPQLT
LIDTLASDATAALKAIDTARAAARARAWKLAGPAAPNHDRSAKAPLVVDVDATLVTAHSEKQLAAATFKKGFGFHPIGAWADHGPDGTGEPLAMLLRPGN
AGSNTAADHISVVKAALAQLPCTTADRRPGRGVLVRTDGAGGTHEFVDWMARQRVQYSVGFTLTTDITAKVDALPEAAWTPAYNADQEPRDGAWVAELTG
VLKLKGWPKDMRVIVRAERPHPGAQLKFTDSNGNRLTAFATNTKGGQLADLELRHRRRARCEDRIRNSKDTGLNNLPLNDFAQNQVWIAVVQLATELTAW
MQMLAFTGTPARTWEPKKLRHRLFSVAARIGRKARRTWLRLSAHAPHRDLLLHGLARLRNLPQLT
Blast result :
Comments
ISNml2 is 76% aa similar to ISRer1.
References
1] ISfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. (2009) Direct submission Genbank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. (2009) Direct submission Genbank.