ISKol11
- Family ISNCY
- Group ISLbi1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_012785 | ND | Kosmotoga olearia | Kosmotoga olearia TBF 19.5.1 |
DNA section
IS Length : 1365 bp
Ends
IR Length : 28/36
IRL : CGAATTGCCTCATAAAAAATCTACTCGAAAAGGGAACATTGCGTCAAAAA
IRR : CGTAATGCCTCAAAAATAAATCTACTTGAAATAGGATGGACGCCTCAAAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGGTTTAATA | TGGTG | AGCACATCTC | 5 |
| TAAACGTCAA | TATCC | CTAGCGGGAA | 5 |
| AGAAAATGAA | GAAGG | AATGAGAAAT | 5 |
| ACAAAGTCAA | GATTT | CGAGTTACCC | 5 |
| ATCAGGTCAA | GTAAC | TTTTCTGTTT | 5 |
| AGGCATTACG | GA/GGGG | CGAGTTGCCT | 5 |
| AAAATGTCAA | GAGGG | CGAATTGCTT | 5 |
DNA sequence
CGAATTGCCTCATAAAAAATCTACTCGAAAAGGGAACATTGCGTCAAAAATAAATCTACTCGAAAAAGAGGGATAATCTTCTCGAATACCAAAGAAGGTA
GGCGAGAAGATGAAGAGGCTGGATATGAAAAATGTGGTGAAGGATTATTCAAAAAGGTACAGAAAAGCTCGCAAAAAAGAAAAATCCGAGATTCTAGATG
AATTCACCCGAGTTACCAAGTATAATCGTAGTTACGCATCGTTTTTACTACGAGGAGCCTTGAAAAAGCGAAAGGCAACCTCACCCAGCCAGAAAAAGGG
TCGAAAGAAAAAATATGATCACAAAGTCTTCGTGAAACTCGTGAAGATATGGGAGATAATGGATTTTCCATGTGGTAAAAGGCTCGAAGCAGTGATGGAC
GAAGTAATAGATAATCTTGTTCGTAATGGGCATCTAACATTGGCTGAAGAAACAAAGAGGAAGCTTCTCAGCATAAGTGCTTCCACTATCGACAGATTGT
TATCCAGCGAGAGGAAAAAGATGGAACTCAAAGGACGATCTCATACAAAGCCCGGAACACTTCTGAAAAAGCACATACGAATAAAAACACATTACGAGTG
GGACGATACAAGACCAGGCTTTGTTGAGATTGACCTCGTTGGGCATGATGGCGGGAGTGTAAGTGGTGATTTTTGCTACAGCCTCAACATGGTAGATGTA
GCAAGTGGTTGGAGTGTAGTGGCACCAATAAGAAACAAAGCGCAAATCTGGACATTAAAAGCTATAATTCAGTTGAGGAAAACGCTTCCTTTCACTTTAT
TAGGTATTCACTCAGATAACGGATCAGAATTCATTAACAGACACCTATACCGTTATTGTGAAGATGAAGGGCTTCTATTCACCAGAACCCGGAGTTACAA
CAAGAATGATAATTGTCATGTCGAACAAAAGAACTGGTCTGTTGTAAGAAGAGCCGTTGGATATTACAGATACGATACAGAGGAAGAATTCCAAATACTG
AAGGAGTTGTATGCGTCTCTGAATCTGTACAATAATCATTTTCAGCCAAATCAGAAAATCGTTGAGAAAATTAGAAAAGGAAACAAGGTAAGCAAGAAAT
ACGACCGTCCTACTACACCATACGAAAGGATCATGCGATCTCCCTGGGTTGACCAAGATAAAAAAGACAGGCTTCGCAGACAACACGAAGCCCTAGACAT
TTACAAACTCAAGAGTATAATAACACATTTGCAAGAGCAATTACTGAGCATCCAGATTGACAAATCGAAAGGAGGGATCCTCAACTATGTCCCTCTCAAT
TTTAAGTAGATTTGTTTTTGAGGCGTCCATCCTATTTCAAGTAGATTTATTTTTGAGGCATTACG
GGCGAGAAGATGAAGAGGCTGGATATGAAAAATGTGGTGAAGGATTATTCAAAAAGGTACAGAAAAGCTCGCAAAAAAGAAAAATCCGAGATTCTAGATG
AATTCACCCGAGTTACCAAGTATAATCGTAGTTACGCATCGTTTTTACTACGAGGAGCCTTGAAAAAGCGAAAGGCAACCTCACCCAGCCAGAAAAAGGG
TCGAAAGAAAAAATATGATCACAAAGTCTTCGTGAAACTCGTGAAGATATGGGAGATAATGGATTTTCCATGTGGTAAAAGGCTCGAAGCAGTGATGGAC
GAAGTAATAGATAATCTTGTTCGTAATGGGCATCTAACATTGGCTGAAGAAACAAAGAGGAAGCTTCTCAGCATAAGTGCTTCCACTATCGACAGATTGT
TATCCAGCGAGAGGAAAAAGATGGAACTCAAAGGACGATCTCATACAAAGCCCGGAACACTTCTGAAAAAGCACATACGAATAAAAACACATTACGAGTG
GGACGATACAAGACCAGGCTTTGTTGAGATTGACCTCGTTGGGCATGATGGCGGGAGTGTAAGTGGTGATTTTTGCTACAGCCTCAACATGGTAGATGTA
GCAAGTGGTTGGAGTGTAGTGGCACCAATAAGAAACAAAGCGCAAATCTGGACATTAAAAGCTATAATTCAGTTGAGGAAAACGCTTCCTTTCACTTTAT
TAGGTATTCACTCAGATAACGGATCAGAATTCATTAACAGACACCTATACCGTTATTGTGAAGATGAAGGGCTTCTATTCACCAGAACCCGGAGTTACAA
CAAGAATGATAATTGTCATGTCGAACAAAAGAACTGGTCTGTTGTAAGAAGAGCCGTTGGATATTACAGATACGATACAGAGGAAGAATTCCAAATACTG
AAGGAGTTGTATGCGTCTCTGAATCTGTACAATAATCATTTTCAGCCAAATCAGAAAATCGTTGAGAAAATTAGAAAAGGAAACAAGGTAAGCAAGAAAT
ACGACCGTCCTACTACACCATACGAAAGGATCATGCGATCTCCCTGGGTTGACCAAGATAAAAAAGACAGGCTTCGCAGACAACACGAAGCCCTAGACAT
TTACAAACTCAAGAGTATAATAACACATTTGCAAGAGCAATTACTGAGCATCCAGATTGACAAATCGAAAGGAGGGATCCTCAACTATGTCCCTCTCAAT
TTTAAGTAGATTTGTTTTTGAGGCGTCCATCCTATTTCAAGTAGATTTATTTTTGAGGCATTACG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1185 bp | 394 aa | 125 | 1309 | + | No |
Chemistry : Unknow
ORF sequence :
MKNVVKDYSKRYRKARKKEKSEILDEFTRVTKYNRSYASFLLRGALKKRKATSPSQKKGRKKKYDHKVFVKLVKIWEIMDFPCGKRLEAVMDEVIDNLVR
NGHLTLAEETKRKLLSISASTIDRLLSSERKKMELKGRSHTKPGTLLKKHIRIKTHYEWDDTRPGFVEIDLVGHDGGSVSGDFCYSLNMVDVASGWSVVA
PIRNKAQIWTLKAIIQLRKTLPFTLLGIHSDNGSEFINRHLYRYCEDEGLLFTRTRSYNKNDNCHVEQKNWSVVRRAVGYYRYDTEEEFQILKELYASLN
LYNNHFQPNQKIVEKIRKGNKVSKKYDRPTTPYERIMRSPWVDQDKKDRLRRQHEALDIYKLKSIITHLQEQLLSIQIDKSKGGILNYVPLNFK
NGHLTLAEETKRKLLSISASTIDRLLSSERKKMELKGRSHTKPGTLLKKHIRIKTHYEWDDTRPGFVEIDLVGHDGGSVSGDFCYSLNMVDVASGWSVVA
PIRNKAQIWTLKAIIQLRKTLPFTLLGIHSDNGSEFINRHLYRYCEDEGLLFTRTRSYNKNDNCHVEQKNWSVVRRAVGYYRYDTEEEFQILKELYASLN
LYNNHFQPNQKIVEKIRKGNKVSKKYDRPTTPYERIMRSPWVDQDKKDRLRRQHEALDIYKLKSIITHLQEQLLSIQIDKSKGGILNYVPLNFK
Blast result :
Comments
There are 7 complete copies in the genome.
References
1] ISfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G. and Noll,K. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G. and Noll,K. (2009) Direct submission GenBank.