ISNisp7
- Family IS5
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAMY01000001 | ND | Nitrobacter sp. | Nitrobacter sp. Nb-311A |
DNA section
IS Length : 1276 bp
Ends
IR Length : 16
IRL : CAGGCTGTTGAAAAAGCCAGTCGCGGCCGAGCTGTGAGCATGATTTATTG
IRR : CAGGCTGTTGAAGAAGTGTCCCGTCTGGCTTTCGGGATGGCTTAATCGCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGGAAAGGCT | CTAG | GCATCTTCTT | 4 |
| GTGAGGACGA | CTAG | AGGGTGTTCG | 4 |
| GAAAGGTCGC | CTAG | AGGTCTCTCC | 4 |
| GGATCATGCT | CTAG | ATGCGTCCCA | 4 |
| TGGCTCTGTC | CTAG | AGTTCTACAG | 4 |
| CAAACGGAGT | CTAG | AGACCTGAGA | 4 |
| AGTCGATGAC | CTAG | AGCCTTTCCG | 4 |
| CTGATCTGGT | CTAG | AGCGTCAACG | 4 |
| CCAGCGGCCT | CTAG | GACGTCGGCG | 4 |
| TTCTTGCCAT | CTAG | TGGCCGACAG | 4 |
| AGTTTAGAAC | CTAG | CGGAACTAGA | 4 |
DNA sequence
CAGGCTGTTGAAAAAGCCAGTCGCGGCCGAGCTGTGAGCATGATTTATTGCTCCGAAGCGATTTGGAGATGATGAGTGCGCGGTGGTGACAATCTGACTG
GCGAGCTGTTCAGCTACGTTGATCTGGAGGCGCGGGTTCGACGCGACCACCCGCTTCGCGCCATCCGGGTCACGGTGAACGAAGGGCTTGTCGCTTTGGA
GCGGGAGTTCGCGGCGCTGTACTCGCCACTCGGGCGGCCGTCGATCCCACCCGAGAAGTTGCTCAGGGCGATGCTCTTGCAGGCGTTCTACTCGATCCGC
TCGGAGCGGTTGCTTATGGAGCGGCTGGAATACGACCTTCTGTTCCGCTGGTTCGTGGGCATCGGCGTCGACGATCCAGCCTGGGACCATTCGGTGTTCT
CGAAGAATCGCGAGCGGCTGCTTGAGGGCGACATCGCGGCCAAATTCCTGAGTGCGGTGCTGGCCCAGCCCAAGGTGAAGAAGCTGCTGTCGACAGATCA
CTTCTCGGTCGACGGCACGCTGATCGAGGCCTGGGCTTCGATGAAGAGCGTCAAACCGAAGGACGGCTCTGGCGAGCCGCCGGCCGGCGGCGTCGGGCGC
AATGCCGAAGCCGACTTCCACGGCCAGAAGCGGACTAACGACACGCATGCCTCGACCACCGATCCGGACGCAAGGCTCTACAAGAAGGGCAAGGGCAAGG
AGGCGAAGCTATGCTTCATGGGTCATGGGCTGATGGAGAACCGCCACGGCCTGTTGGTCGACGCCTGCCTGACGCTGGCCGACGGACATGCCGAGCGGGT
GGCGGCGTTGCACATGATCGAACCTCGCGCCGACCGGCCCCTGGCCATCACACTTGGCGCTGATAAGGCCTATGACACGGAGGACTTCGTCAATGAGTTG
CGCGCGATGAAGGTGACGCCGCACGTGGCGCAGAACACGAGAGGCCGAAGCTCGGCGATCGACGGACGCACGACGCGGCACAGCGGCTATGCCGTCAGCC
AGCGTATCCGCAAGCGCATTGAGGAAGCCTTCGGCTGGATCAAGACGGTCGCCCGCCAGGACAAGACCCGCTTCCGCGGCCGCGACCGCGTCGAATGGGC
CTTCACCTTCGCAGCCGCCGCTTACAATCTGGTGCGACTGCCGAAGCTCATGGCGGTGCCAGCATGACCCCCCGTCCCACGGCCACGCCAAACTGCTCGA
CAGCTCAATCCAAATCTCATCACAACGGCGATTAAGCCATCCCGAAAGCCAGACGGGACACTTCTTCAACAGCCTG
GCGAGCTGTTCAGCTACGTTGATCTGGAGGCGCGGGTTCGACGCGACCACCCGCTTCGCGCCATCCGGGTCACGGTGAACGAAGGGCTTGTCGCTTTGGA
GCGGGAGTTCGCGGCGCTGTACTCGCCACTCGGGCGGCCGTCGATCCCACCCGAGAAGTTGCTCAGGGCGATGCTCTTGCAGGCGTTCTACTCGATCCGC
TCGGAGCGGTTGCTTATGGAGCGGCTGGAATACGACCTTCTGTTCCGCTGGTTCGTGGGCATCGGCGTCGACGATCCAGCCTGGGACCATTCGGTGTTCT
CGAAGAATCGCGAGCGGCTGCTTGAGGGCGACATCGCGGCCAAATTCCTGAGTGCGGTGCTGGCCCAGCCCAAGGTGAAGAAGCTGCTGTCGACAGATCA
CTTCTCGGTCGACGGCACGCTGATCGAGGCCTGGGCTTCGATGAAGAGCGTCAAACCGAAGGACGGCTCTGGCGAGCCGCCGGCCGGCGGCGTCGGGCGC
AATGCCGAAGCCGACTTCCACGGCCAGAAGCGGACTAACGACACGCATGCCTCGACCACCGATCCGGACGCAAGGCTCTACAAGAAGGGCAAGGGCAAGG
AGGCGAAGCTATGCTTCATGGGTCATGGGCTGATGGAGAACCGCCACGGCCTGTTGGTCGACGCCTGCCTGACGCTGGCCGACGGACATGCCGAGCGGGT
GGCGGCGTTGCACATGATCGAACCTCGCGCCGACCGGCCCCTGGCCATCACACTTGGCGCTGATAAGGCCTATGACACGGAGGACTTCGTCAATGAGTTG
CGCGCGATGAAGGTGACGCCGCACGTGGCGCAGAACACGAGAGGCCGAAGCTCGGCGATCGACGGACGCACGACGCGGCACAGCGGCTATGCCGTCAGCC
AGCGTATCCGCAAGCGCATTGAGGAAGCCTTCGGCTGGATCAAGACGGTCGCCCGCCAGGACAAGACCCGCTTCCGCGGCCGCGACCGCGTCGAATGGGC
CTTCACCTTCGCAGCCGCCGCTTACAATCTGGTGCGACTGCCGAAGCTCATGGCGGTGCCAGCATGACCCCCCGTCCCACGGCCACGCCAAACTGCTCGA
CAGCTCAATCCAAATCTCATCACAACGGCGATTAAGCCATCCCGAAAGCCAGACGGGACACTTCTTCAACAGCCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1092 bp | 363 aa | 76 | 1167 | + | No |
Chemistry : DDE
ORF sequence :
MRGGDNLTGELFSYVDLEARVRRDHPLRAIRVTVNEGLVALEREFAALYSPLGRPSIPPEKLLRAMLLQAFYSIRSERLLMERLEYDLLFRWFVGIGVDD
PAWDHSVFSKNRERLLEGDIAAKFLSAVLAQPKVKKLLSTDHFSVDGTLIEAWASMKSVKPKDGSGEPPAGGVGRNAEADFHGQKRTNDTHASTTDPDAR
LYKKGKGKEAKLCFMGHGLMENRHGLLVDACLTLADGHAERVAALHMIEPRADRPLAITLGADKAYDTEDFVNELRAMKVTPHVAQNTRGRSSAIDGRTT
RHSGYAVSQRIRKRIEEAFGWIKTVARQDKTRFRGRDRVEWAFTFAAAAYNLVRLPKLMAVPA
PAWDHSVFSKNRERLLEGDIAAKFLSAVLAQPKVKKLLSTDHFSVDGTLIEAWASMKSVKPKDGSGEPPAGGVGRNAEADFHGQKRTNDTHASTTDPDAR
LYKKGKGKEAKLCFMGHGLMENRHGLLVDACLTLADGHAERVAALHMIEPRADRPLAITLGADKAYDTEDFVNELRAMKVTPHVAQNTRGRSSAIDGRTT
RHSGYAVSQRIRKRIEEAFGWIKTVARQDKTRFRGRDRVEWAFTFAAAAYNLVRLPKLMAVPA
Blast result :
Comments
ISNisp7 is 82% aa similar to ISMch8.
References
1] ISfindera nnotation (2010)
2] Waterbury,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.
2] Waterbury,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.