ISNpu11
- Family IS5
- Group ISL2
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010628 | ND | Nostoc punctiforme | Nostoc punctiforme PCC 73102 |
DNA section
IS Length : 1072 bp
Ends
IR Length : 35/42
IRL : AGACCTCTTGCAGAATTCATTTTGTGTTATGATATCGGGTTTTGTCTTAA
IRR : AGACCTCTTGCAGAATTACTTTTATGTTATGGTGGGGGTTTGGAATTTTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CAGTCAGCAA | ATT | ATGCTCTAAA | 3 |
DNA sequence
AGACCTCTTGCAGAATTCATTTTGTGTTATGATATCGGGTTTTGTCTTAATGCTAGTGGCAAGAGATAATTGAGAAAGGCAATACCTAAAGCATTCAGAA
GAGATGGCTACAATATTTCGTAGGAACTATCGCCAAAAAAAGATAGAATTAAATTCTGTTATTTCCATAAAATCAGGTTATCAATAAATGAAATATCAGT
GCATCCAAAAGTTAAATCCAAGAGCATTTAAACGTCGCTTTGGAGTTAGAAGAAAAACTTTTAAGAGCATGGTTAAAACTATAAAATCATTCCAAAAGAT
TAATAAACACTCTAATCCGGGTGCCAAACCTATAATTGATATTGAGAAACAAGTTTTAGTTACCTTAGAATATTGGAGAGAATACAGAACTTACTTTCAT
ATTGCAACTAGTTGGGGAGTCTCGGAATCAACTATTTGCCGCATTGTTCATCGCATAGAATCAGAACTGATGCAGTCAGGAATGTTTCGTCTTCCTGGAA
AAAAAGCTTTGCTGCAAGGTTTAAGTCAGCCGGAAGTAGTAGTAATGGATGTAACTGAAACACCCATTGAGCGTCCAAAAAGAAAACAACAGGAATTTTA
TTCAGGTAAGAAAAAACGTCATACTCTCAAAAGGCAATTGATTATTAATCAAGAAACGGGCGAAATTATTTGCACTTTCTTTGGGAAAGGTCGCTGTCAC
GATTTTGCTTTATTCAAAGCTAGTGGAATTAATTTTCATCCCGAAACACAAGGTTTATACGATAGCGGTTATCAAGGAATTAATCAATATCATAGTAACA
GTTACACTCCCAAAAAAAAGCCTAAAAAAGGAAACCTATCTATCTTAGAAAAAGACTATAATCGGGTTCTAGCAAAAGAGAGAATCGGTATTGAACACAT
CAATTGCCGTCTGAAAATTTTCAAGATTTTTGGCGATAGATATCGTAATCGCCGTCGTCGTTATGGTCTGCGTTGTAACTTACTAGCCTCAATTTACAAC
TACGAATTAAGTTTACCAGAAGCAAAATTCCAAACCCCCACCATAACATAAAAGTAATTCTGCAAGAGGTCT
GAGATGGCTACAATATTTCGTAGGAACTATCGCCAAAAAAAGATAGAATTAAATTCTGTTATTTCCATAAAATCAGGTTATCAATAAATGAAATATCAGT
GCATCCAAAAGTTAAATCCAAGAGCATTTAAACGTCGCTTTGGAGTTAGAAGAAAAACTTTTAAGAGCATGGTTAAAACTATAAAATCATTCCAAAAGAT
TAATAAACACTCTAATCCGGGTGCCAAACCTATAATTGATATTGAGAAACAAGTTTTAGTTACCTTAGAATATTGGAGAGAATACAGAACTTACTTTCAT
ATTGCAACTAGTTGGGGAGTCTCGGAATCAACTATTTGCCGCATTGTTCATCGCATAGAATCAGAACTGATGCAGTCAGGAATGTTTCGTCTTCCTGGAA
AAAAAGCTTTGCTGCAAGGTTTAAGTCAGCCGGAAGTAGTAGTAATGGATGTAACTGAAACACCCATTGAGCGTCCAAAAAGAAAACAACAGGAATTTTA
TTCAGGTAAGAAAAAACGTCATACTCTCAAAAGGCAATTGATTATTAATCAAGAAACGGGCGAAATTATTTGCACTTTCTTTGGGAAAGGTCGCTGTCAC
GATTTTGCTTTATTCAAAGCTAGTGGAATTAATTTTCATCCCGAAACACAAGGTTTATACGATAGCGGTTATCAAGGAATTAATCAATATCATAGTAACA
GTTACACTCCCAAAAAAAAGCCTAAAAAAGGAAACCTATCTATCTTAGAAAAAGACTATAATCGGGTTCTAGCAAAAGAGAGAATCGGTATTGAACACAT
CAATTGCCGTCTGAAAATTTTCAAGATTTTTGGCGATAGATATCGTAATCGCCGTCGTCGTTATGGTCTGCGTTGTAACTTACTAGCCTCAATTTACAAC
TACGAATTAAGTTTACCAGAAGCAAAATTCCAAACCCCCACCATAACATAAAAGTAATTCTGCAAGAGGTCT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 864 bp | 287 aa | 188 | 1051 | + | No |
Chemistry : DDE
ORF sequence :
MKYQCIQKLNPRAFKRRFGVRRKTFKSMVKTIKSFQKINKHSNPGAKPIIDIEKQVLVTLEYWREYRTYFHIATSWGVSESTICRIVHRIESELMQSGMF
RLPGKKALLQGLSQPEVVVMDVTETPIERPKRKQQEFYSGKKKRHTLKRQLIINQETGEIICTFFGKGRCHDFALFKASGINFHPETQGLYDSGYQGINQ
YHSNSYTPKKKPKKGNLSILEKDYNRVLAKERIGIEHINCRLKIFKIFGDRYRNRRRRYGLRCNLLASIYNYELSLPEAKFQTPTIT
RLPGKKALLQGLSQPEVVVMDVTETPIERPKRKQQEFYSGKKKRHTLKRQLIINQETGEIICTFFGKGRCHDFALFKASGINFHPETQGLYDSGYQGINQ
YHSNSYTPKKKPKKGNLSILEKDYNRVLAKERIGIEHINCRLKIFKIFGDRYRNRRRRYGLRCNLLASIYNYELSLPEAKFQTPTIT
Blast result :
Comments
ISNpu11 is 76% aa similar to ISMae4.
References
1] ISfinder annotation (2010).
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Meeks,J.C., Elhai,J., Campbell,E.L., Thiel,T., Longmire,J., Potts,M. and Atlas,R. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Meeks,J.C., Elhai,J., Campbell,E.L., Thiel,T., Longmire,J., Potts,M. and Atlas,R. (2008) Direct submission GenBank.