ISVsp6
- Family ISAs1
- Group
Isoform ISVsp18Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABIZ00000000.1 | ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 1241 bp
Ends
IR Length : 17
IRL : CAGGGCTTACGCATCTAGTTTTTACAAAGCACGTGGAAATTAGTTAAGAT
IRR : CAGGGCTTACGCATCTAAATTTACTCCAAGCAAGGTTTGGAGATAGTCTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCCGGATCTG | TCCAGGTATC | GTTGTCACCA | 10 |
| CAGAGACCGA | GTTGTGGGA | CTACAAGCCA | 9 |
| GAATCCCTTC | AGAAGGGACC | CGGCATCAGG | 10 |
| CTTTTGGCAG | GGGCACTCGC | TGACAGGAGA | 10 |
| CGCATAAAGC | GTCCGTTCAG | TTTACGCCAT | 10 |
DNA sequence
CAGGGCTTACGCATCTAGTTTTTACAAAGCACGTGGAAATTAGTTAAGATGTGTGAATGAAGTGGGGCATGTCTTCCGCCTCTGCATCTCCTGACAGCAA
CCTTCGTGAAGTTTTTCAGAGCATTGATGACTGGAGGGTGCAGCGTACCCAGCGACATGATCTGGCCGACATCCTGGTGATTGCCACCTGCGCCATGCTG
TGCGGTCAGGGGCATTACACCCATATGGAAGCCTTCGGCAATCTGAAGCGCACTTGGTTGGAGAGCTTTCTTGCCCTGCCCAACGGCATTCCCAGTCACG
ACACGTTCCGTAAAGTCTTCAGCCTGCTTGATCCCAAGCGCTTCATGGAAGCCTTCAGTCTCTGGACCCAAGGTGTATTGCGCCAACTCTCCAGCGAGGG
GCTTGAGAGCGGTCTCAAAGGGGTGATCGCCATTGATGGAAAGGCACTGCGCGGGGCCGTCGACAAAGGGCAGGCACCTGCGGTCATCGTGGGGGCTTGG
GCCAGTGAATTGAGCCTGTGCCTTGGACAGGTCAAGGTTGCTGACAAGAGCAATGAGATTGGCGCGATGCCGGAGTTGTTGGAAATGCTGGCGTTGAAAG
GCTGCATCGTGACCATCGACGCCATGGGCTGCCAGAGGGAGGTGGCCAGGAAAATCATCCAGCAAAAGGGGGACTACATCCTGGCCCTCAAAAGCAACCA
GGAAAGCCTCCATCAACAGGTCAGCCACTATTTGGACACGGGGGAGGACCTGGCCAGGGCAGAAGGCAACTTTCATCAAGAGGAAAGCGATGGGCACGGC
CGGCATGAAGTGCGTCGCTGTTGGGTGAGTGAGGAAGTGGAATGCTGGCTGCAGGGGGCAGAAAAGTGGGCGGGACTGCGCAGCGTGGCTGCGGTGGAAT
GCGAGCGCACCGTGGCGGGTCAGACCACGGTGCAAAGGCGTTACTTCATCAGCAGTTTGAAAGCCGATGCCGCGCTCATTGCAGCCTCAGTACGCGCTCA
CTGGGGGATTGAAAACTCGCTGCACTGGGTTCTAGATGTGACCTTTGGCGAAGATGAGAGCCGGTCTAGAAGCGGTTACAGTGCGGAGAATCTGGCCACC
CTTCGACGCCTGACTCATGCAATGATCAAGCGAGAGAACCCAAACTCCAAAAAATCGGTCAACCAACGCAGATTCGAAGCCGGACTCAGTACAGACTATC
TCCAAACCTTGCTTGGAGTAAATTTAGATGCGTAAGCCCTG
CCTTCGTGAAGTTTTTCAGAGCATTGATGACTGGAGGGTGCAGCGTACCCAGCGACATGATCTGGCCGACATCCTGGTGATTGCCACCTGCGCCATGCTG
TGCGGTCAGGGGCATTACACCCATATGGAAGCCTTCGGCAATCTGAAGCGCACTTGGTTGGAGAGCTTTCTTGCCCTGCCCAACGGCATTCCCAGTCACG
ACACGTTCCGTAAAGTCTTCAGCCTGCTTGATCCCAAGCGCTTCATGGAAGCCTTCAGTCTCTGGACCCAAGGTGTATTGCGCCAACTCTCCAGCGAGGG
GCTTGAGAGCGGTCTCAAAGGGGTGATCGCCATTGATGGAAAGGCACTGCGCGGGGCCGTCGACAAAGGGCAGGCACCTGCGGTCATCGTGGGGGCTTGG
GCCAGTGAATTGAGCCTGTGCCTTGGACAGGTCAAGGTTGCTGACAAGAGCAATGAGATTGGCGCGATGCCGGAGTTGTTGGAAATGCTGGCGTTGAAAG
GCTGCATCGTGACCATCGACGCCATGGGCTGCCAGAGGGAGGTGGCCAGGAAAATCATCCAGCAAAAGGGGGACTACATCCTGGCCCTCAAAAGCAACCA
GGAAAGCCTCCATCAACAGGTCAGCCACTATTTGGACACGGGGGAGGACCTGGCCAGGGCAGAAGGCAACTTTCATCAAGAGGAAAGCGATGGGCACGGC
CGGCATGAAGTGCGTCGCTGTTGGGTGAGTGAGGAAGTGGAATGCTGGCTGCAGGGGGCAGAAAAGTGGGCGGGACTGCGCAGCGTGGCTGCGGTGGAAT
GCGAGCGCACCGTGGCGGGTCAGACCACGGTGCAAAGGCGTTACTTCATCAGCAGTTTGAAAGCCGATGCCGCGCTCATTGCAGCCTCAGTACGCGCTCA
CTGGGGGATTGAAAACTCGCTGCACTGGGTTCTAGATGTGACCTTTGGCGAAGATGAGAGCCGGTCTAGAAGCGGTTACAGTGCGGAGAATCTGGCCACC
CTTCGACGCCTGACTCATGCAATGATCAAGCGAGAGAACCCAAACTCCAAAAAATCGGTCAACCAACGCAGATTCGAAGCCGGACTCAGTACAGACTATC
TCCAAACCTTGCTTGGAGTAAATTTAGATGCGTAAGCCCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1167 bp | 388 aa | 69 | 1235 | + | No |
Chemistry : Unknow
ORF sequence :
MSSASASPDSNLREVFQSIDDWRVQRTQRHDLADILVIATCAMLCGQGHYTHMEAFGNLKRTWLESFLALPNGIPSHDTFRKVFSLLDPKRFMEAFSLWT
QGVLRQLSSEGLESGLKGVIAIDGKALRGAVDKGQAPAVIVGAWASELSLCLGQVKVADKSNEIGAMPELLEMLALKGCIVTIDAMGCQREVARKIIQQK
GDYILALKSNQESLHQQVSHYLDTGEDLARAEGNFHQEESDGHGRHEVRRCWVSEEVECWLQGAEKWAGLRSVAAVECERTVAGQTTVQRRYFISSLKAD
AALIAASVRAHWGIENSLHWVLDVTFGEDESRSRSGYSAENLATLRRLTHAMIKRENPNSKKSVNQRRFEAGLSTDYLQTLLGVNLDA
QGVLRQLSSEGLESGLKGVIAIDGKALRGAVDKGQAPAVIVGAWASELSLCLGQVKVADKSNEIGAMPELLEMLALKGCIVTIDAMGCQREVARKIIQQK
GDYILALKSNQESLHQQVSHYLDTGEDLARAEGNFHQEESDGHGRHEVRRCWVSEEVECWLQGAEKWAGLRSVAAVECERTVAGQTTVQRRYFISSLKAD
AALIAASVRAHWGIENSLHWVLDVTFGEDESRSRSGYSAENLATLRRLTHAMIKRENPNSKKSVNQRRFEAGLSTDYLQTLLGVNLDA
Blast result :
Comments
ISVsp6 is 99% aa similar to ISVsp18.
There are 6 copies of ISVsp6 in the chromosome of Verrucomicrobium spinosum DSM 4136.
There are 6 copies of ISVsp6 in the chromosome of Verrucomicrobium spinosum DSM 4136.
References
1]DeBoy, R. (2010) Direct submission