ISVsp2
- Family IS1634
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 2089 bp
Ends
IR Length : 19/21
IRL : CCCGACTTGGCGGACTCGCGGTCGATTTGGGCTATTTTCGGCCGCTTGAC
IRR : CCCGACTTAGCGGACTGGCGGGTCCAGTGATCCTCCAACCCTTGATTTTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGACTCTTTT | TTAG | GTACGTGGGG | 4 |
| CGTCCGGCGT | CTAA | TGGCTTTGAT | 4 |
DNA sequence
CCCGACTTGGCGGACTCGCGGTCGATTTGGGCTATTTTCGGCCGCTTGACGCGCTGCAACCCTTGATTTTGCGAGGGTCCGTTTCCAAAACGGCTTGTAG
TGAAGACCTTGGTGGTTGCACTGTCGTTTTGCTGGCTACCTTCTTGGGCCATCATGTTCCTGCGTTGCACCAAACGGCTCAAGGATGGCAAAGAACACCT
TTACTGGAGCATCGTCGAAAGCAGGCGTGTCAGCCCGCGTCAGGTGGTCCAGAGGCATGTGCTTTATCTGGGCGAACTCAACGGCCGCCAGGAGGCTTCC
TGGCGCAAGACCATCGAACTCTTCGGCCAGGATGAAGGGGCCCCTCAGCAGGTGGCTCTCTTTGCCGAGGAACATGCCCCCAAGCATGTCGGCGTCGATG
AGTTCCCCGTGGTGCAACTGCGCCTTCATGCCATGCGCCTGGAACGTCCCCGCCAGTGGGGAGCCTGCTGGCTGGCCTGCCAGCTGTGGGAGCAGTTGCT
CCTGGCGGACTTCTGGCAGGAGCGTCTGCCGCCCAGCCGAGAAGGCACCCGCTGGGATCTGGTGCTCCAGACCCTCGTGCTCTACCGGCTCATCGAACCG
GGCAGTGAATGGCGGCTGCACCGCCATTGGTTTGACCAGACGGCCATCGCCGACCTGCTGGACGCAGACTTTGTCCTGGCTGAGATCCACCGTCTCTACG
AGTGCCATGACAAGATCCTGGCTCACAAACGGTCCTTGTTTGATCATCTGACTCAACGCTGGCGCGACCTCTTTGGCGTCCGGTACGAGGTGCTGCTCTA
CGACCTCACCAGCACTTATTTTGAGTGCGCCCCCCCTGACAACCCCACGGGCCTGCGCCGCTTTGGCTACAGCCGTGACAAGCGCAGCGACTGTGTGCAG
GTGGTCATTGCCCTCATTGTCACCCCCGAGGGCTTTCCCCTGGCCTATGAAGTGCTGCCGGGTAACACGGCGGACAAGACCACGCTCAAAGCCTTCCTGG
CAAAGATCGAAGACCAGTACGGCCAGGCCGATCGCATCTGGGTCATGGACCGGGGCATCCCCACCGAAGAGACCCTTGAGCAGATGCGTCAGAGCACGCC
ACCGGTGAGCTATCTGGTGGGGACTCCCAAAGGACGCTTGAGCAAGCTGGAGGAGTCCCTGGCCCAGCAGCCCTGGCAGCAAGCCCGACCCCAGGTGCGC
GTCAAACTGCTGCCTCATGAAGGGGAGACTTATGTGCTGGCCCAGAGTGAGGACCGCGTGGCCAAAGAACGCTCCATGCGCCGCCGCCGGTTGCGCAAGT
ACCTTGATGCCCTCCAAGGGTTGCGCCAGCGCAAGCGTCCCCTCACGCGCGACGCCATGCATGAAGCGTTGGGAGCCGCCAAAAAAGAAGCGGGACGCGA
TGCTCGCTTTGTCAAAGTCAGCGTACAGTTGCAGCCCGCCAAAGAAGAGGGCAAAGCCAAAGCCAAAGCCAAAGCCAAAGGCAAGAGCAAGCAACTGGCG
ACTTTGAGCTGGCAGCTGGACCGCAAAACATTGCGCGAAGCGTGGCGGCGGGAGGGAAGGTATCTGCTGCGCACCAATCTGACGGCCACCGATCCTGCGC
GACTCTGGGAGTATTACCTGCAACTGGTGGAAGTGGAGCAGGCGTTCAAAGAGCTGAAGCATGACTTGGGGATCCGTCCGGTGCATCACCAGCACGATCA
TCGCATCGAGGCGCACATCTTCGTGTCATTCCTGGCGTACTGCCTGCAGGTGACGCTCAAGGCGCGCTTGAAGCTGACGGCCAGCGGGCTGACACCGCGC
AGTGTGCTGGAGAAGTTTGCGACGGTGCAGATGCTTGATGTGCATCTGCCCACGACCGATGGGCGGGAGGTGGTGATGAGCCGCTACACGCAGCCCTCCA
AAGAGATGCAGCTGTTGCTCGACCAGCTCAAGATGACGCTGCCTGAGCAGGCTCCGCCTAAAATCACTGGTTGATACCCAATGAAGAAAGGTCGCGAAAT
GGCCTCAGATGTAGTGAAGACCTTTTGAGGTCAATGTCGCAAAATCAAGGGTTGGAGGATCACTGGACCCGCCAGTCCGCTAAGTCGGG
TGAAGACCTTGGTGGTTGCACTGTCGTTTTGCTGGCTACCTTCTTGGGCCATCATGTTCCTGCGTTGCACCAAACGGCTCAAGGATGGCAAAGAACACCT
TTACTGGAGCATCGTCGAAAGCAGGCGTGTCAGCCCGCGTCAGGTGGTCCAGAGGCATGTGCTTTATCTGGGCGAACTCAACGGCCGCCAGGAGGCTTCC
TGGCGCAAGACCATCGAACTCTTCGGCCAGGATGAAGGGGCCCCTCAGCAGGTGGCTCTCTTTGCCGAGGAACATGCCCCCAAGCATGTCGGCGTCGATG
AGTTCCCCGTGGTGCAACTGCGCCTTCATGCCATGCGCCTGGAACGTCCCCGCCAGTGGGGAGCCTGCTGGCTGGCCTGCCAGCTGTGGGAGCAGTTGCT
CCTGGCGGACTTCTGGCAGGAGCGTCTGCCGCCCAGCCGAGAAGGCACCCGCTGGGATCTGGTGCTCCAGACCCTCGTGCTCTACCGGCTCATCGAACCG
GGCAGTGAATGGCGGCTGCACCGCCATTGGTTTGACCAGACGGCCATCGCCGACCTGCTGGACGCAGACTTTGTCCTGGCTGAGATCCACCGTCTCTACG
AGTGCCATGACAAGATCCTGGCTCACAAACGGTCCTTGTTTGATCATCTGACTCAACGCTGGCGCGACCTCTTTGGCGTCCGGTACGAGGTGCTGCTCTA
CGACCTCACCAGCACTTATTTTGAGTGCGCCCCCCCTGACAACCCCACGGGCCTGCGCCGCTTTGGCTACAGCCGTGACAAGCGCAGCGACTGTGTGCAG
GTGGTCATTGCCCTCATTGTCACCCCCGAGGGCTTTCCCCTGGCCTATGAAGTGCTGCCGGGTAACACGGCGGACAAGACCACGCTCAAAGCCTTCCTGG
CAAAGATCGAAGACCAGTACGGCCAGGCCGATCGCATCTGGGTCATGGACCGGGGCATCCCCACCGAAGAGACCCTTGAGCAGATGCGTCAGAGCACGCC
ACCGGTGAGCTATCTGGTGGGGACTCCCAAAGGACGCTTGAGCAAGCTGGAGGAGTCCCTGGCCCAGCAGCCCTGGCAGCAAGCCCGACCCCAGGTGCGC
GTCAAACTGCTGCCTCATGAAGGGGAGACTTATGTGCTGGCCCAGAGTGAGGACCGCGTGGCCAAAGAACGCTCCATGCGCCGCCGCCGGTTGCGCAAGT
ACCTTGATGCCCTCCAAGGGTTGCGCCAGCGCAAGCGTCCCCTCACGCGCGACGCCATGCATGAAGCGTTGGGAGCCGCCAAAAAAGAAGCGGGACGCGA
TGCTCGCTTTGTCAAAGTCAGCGTACAGTTGCAGCCCGCCAAAGAAGAGGGCAAAGCCAAAGCCAAAGCCAAAGCCAAAGGCAAGAGCAAGCAACTGGCG
ACTTTGAGCTGGCAGCTGGACCGCAAAACATTGCGCGAAGCGTGGCGGCGGGAGGGAAGGTATCTGCTGCGCACCAATCTGACGGCCACCGATCCTGCGC
GACTCTGGGAGTATTACCTGCAACTGGTGGAAGTGGAGCAGGCGTTCAAAGAGCTGAAGCATGACTTGGGGATCCGTCCGGTGCATCACCAGCACGATCA
TCGCATCGAGGCGCACATCTTCGTGTCATTCCTGGCGTACTGCCTGCAGGTGACGCTCAAGGCGCGCTTGAAGCTGACGGCCAGCGGGCTGACACCGCGC
AGTGTGCTGGAGAAGTTTGCGACGGTGCAGATGCTTGATGTGCATCTGCCCACGACCGATGGGCGGGAGGTGGTGATGAGCCGCTACACGCAGCCCTCCA
AAGAGATGCAGCTGTTGCTCGACCAGCTCAAGATGACGCTGCCTGAGCAGGCTCCGCCTAAAATCACTGGTTGATACCCAATGAAGAAAGGTCGCGAAAT
GGCCTCAGATGTAGTGAAGACCTTTTGAGGTCAATGTCGCAAAATCAAGGGTTGGAGGATCACTGGACCCGCCAGTCCGCTAAGTCGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1875 bp | 624 aa | 100 | 1974 | + | No |
Chemistry : DDE
ORF sequence :
MKTLVVALSFCWLPSWAIMFLRCTKRLKDGKEHLYWSIVESRRVSPRQVVQRHVLYLGELNGRQEASWRKTIELFGQDEGAPQQVALFAEEHAPKHVGVD
EFPVVQLRLHAMRLERPRQWGACWLACQLWEQLLLADFWQERLPPSREGTRWDLVLQTLVLYRLIEPGSEWRLHRHWFDQTAIADLLDADFVLAEIHRLY
ECHDKILAHKRSLFDHLTQRWRDLFGVRYEVLLYDLTSTYFECAPPDNPTGLRRFGYSRDKRSDCVQVVIALIVTPEGFPLAYEVLPGNTADKTTLKAFL
AKIEDQYGQADRIWVMDRGIPTEETLEQMRQSTPPVSYLVGTPKGRLSKLEESLAQQPWQQARPQVRVKLLPHEGETYVLAQSEDRVAKERSMRRRRLRK
YLDALQGLRQRKRPLTRDAMHEALGAAKKEAGRDARFVKVSVQLQPAKEEGKAKAKAKAKGKSKQLATLSWQLDRKTLREAWRREGRYLLRTNLTATDPA
RLWEYYLQLVEVEQAFKELKHDLGIRPVHHQHDHRIEAHIFVSFLAYCLQVTLKARLKLTASGLTPRSVLEKFATVQMLDVHLPTTDGREVVMSRYTQPS
KEMQLLLDQLKMTLPEQAPPKITG
EFPVVQLRLHAMRLERPRQWGACWLACQLWEQLLLADFWQERLPPSREGTRWDLVLQTLVLYRLIEPGSEWRLHRHWFDQTAIADLLDADFVLAEIHRLY
ECHDKILAHKRSLFDHLTQRWRDLFGVRYEVLLYDLTSTYFECAPPDNPTGLRRFGYSRDKRSDCVQVVIALIVTPEGFPLAYEVLPGNTADKTTLKAFL
AKIEDQYGQADRIWVMDRGIPTEETLEQMRQSTPPVSYLVGTPKGRLSKLEESLAQQPWQQARPQVRVKLLPHEGETYVLAQSEDRVAKERSMRRRRLRK
YLDALQGLRQRKRPLTRDAMHEALGAAKKEAGRDARFVKVSVQLQPAKEEGKAKAKAKAKGKSKQLATLSWQLDRKTLREAWRREGRYLLRTNLTATDPA
RLWEYYLQLVEVEQAFKELKHDLGIRPVHHQHDHRIEAHIFVSFLAYCLQVTLKARLKLTASGLTPRSVLEKFATVQMLDVHLPTTDGREVVMSRYTQPS
KEMQLLLDQLKMTLPEQAPPKITG
Blast result :
Comments
Genome in progress. Accession number: NZ_ABIZ00000000.
There are 2 copies of ISVsp2 in the chromosome of Verrucomicrobium spinosum DSM 4136. ISVsp2 is closely related to ISVsp1 at the protein level.
ISVsp2 is 95% aa similar to ISVsp1.
There are 2 copies of ISVsp2 in the chromosome of Verrucomicrobium spinosum DSM 4136. ISVsp2 is closely related to ISVsp1 at the protein level.
ISVsp2 is 95% aa similar to ISVsp1.
References
1] DeBoy, R. (2010) Direct submission