ISNma1
- Family IS5
- Group ISH1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013924 | ND | Natrialba magadii | Natrialba magadii ATCC 43099 plasmid pNMAG02 |
DNA section
IS Length : 934 bp
Ends
IR Length : 22/33
IRL : GGCCATGTTTAGACGCCGCTCAGTTGATGTCTCGACCGGGATTATGTAGA
IRR : GGGCTTGTTTAGGCGCGGGAGATTAGTGGTCTCAGAGCTTCACAGCTTGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACGGGGCGCG | GATAGCGCAT | 0 |
DNA sequence
GGCCATGTTTAGACGCCGCTCAGTTGATGTCTCGACCGGGATTATGTAGAGTTGAGTAAGGAAGCGGCGAGTATGCCGTCGCAACTCGCTCGTTTCACCG
ACCGATGCGTCGATTTGTCCCAGGATGCTGTCATTGGCGAGCCAGCACCGGCGGTCGAGAAGGGTGACGGCGGCTATGCTGACTGGGTGATCGTCTCGAT
TCACTGTCTCAGAGAGTATCTGAATCAGCCCTACCGCCGATTACTCGATATCTTGTACGAAATGCCTGCAATTGCTGCTAAACTCGGACTGTCTGTGGAT
CAGCTTCCGGATTTTACCACCGTCTGCACGCGGAAGCAGGATCTCAGAATGCGGATCTGGCGGGTGTTGCTGCGGCTGTCTGTCTCACTGCACGAACTCG
GCGACGTCCAAGCGATCGACGCAACTGGTTTCAAACGGCATCAGGCCAGCCGTCACTACGTTCTCCGCGTCGGCTACAATTTTGACGACATCAAGACGAC
AGCGCTCGTCGATTGCGATACCAGCGTCATCCTCGACATTCATTGCTCGATGAAACAACCTCATGATACCCAAGTTGGACGGCAGGTACTGACGAGAAAT
CGCACCCGATTGAGCACGATCGCCGCTGACAAAAGCTACGACTGGGACGCGCTCCGGCACGAACTCAGGGACGCTGGCATCCGCCCGGTGATCAAACATC
GTGAGTTCTACGCACTCAATAAAGCGCACAACGCTCGCCACAACGAAACCGTCTATCACCGCCGGTCGATCGCCGAGGTGATCTTCTTTGCACTGAAGCA
TCGGTTCGGCGAGACGTTGCGGGCTAGAACGTGGTTTGGCCAGTTCAGAGAACTCGTCCTAAAGACTGCCGTTAGGAACATCGAGCAAGCTGTGAAGCTC
TGAGACCACTAATCTCCCGCGCCTAAACAAGCCC
ACCGATGCGTCGATTTGTCCCAGGATGCTGTCATTGGCGAGCCAGCACCGGCGGTCGAGAAGGGTGACGGCGGCTATGCTGACTGGGTGATCGTCTCGAT
TCACTGTCTCAGAGAGTATCTGAATCAGCCCTACCGCCGATTACTCGATATCTTGTACGAAATGCCTGCAATTGCTGCTAAACTCGGACTGTCTGTGGAT
CAGCTTCCGGATTTTACCACCGTCTGCACGCGGAAGCAGGATCTCAGAATGCGGATCTGGCGGGTGTTGCTGCGGCTGTCTGTCTCACTGCACGAACTCG
GCGACGTCCAAGCGATCGACGCAACTGGTTTCAAACGGCATCAGGCCAGCCGTCACTACGTTCTCCGCGTCGGCTACAATTTTGACGACATCAAGACGAC
AGCGCTCGTCGATTGCGATACCAGCGTCATCCTCGACATTCATTGCTCGATGAAACAACCTCATGATACCCAAGTTGGACGGCAGGTACTGACGAGAAAT
CGCACCCGATTGAGCACGATCGCCGCTGACAAAAGCTACGACTGGGACGCGCTCCGGCACGAACTCAGGGACGCTGGCATCCGCCCGGTGATCAAACATC
GTGAGTTCTACGCACTCAATAAAGCGCACAACGCTCGCCACAACGAAACCGTCTATCACCGCCGGTCGATCGCCGAGGTGATCTTCTTTGCACTGAAGCA
TCGGTTCGGCGAGACGTTGCGGGCTAGAACGTGGTTTGGCCAGTTCAGAGAACTCGTCCTAAAGACTGCCGTTAGGAACATCGAGCAAGCTGTGAAGCTC
TGAGACCACTAATCTCCCGCGCCTAAACAAGCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 831 bp | 276 aa | 73 | 903 | + | No |
Chemistry : DDE
ORF sequence :
MPSQLARFTDRCVDLSQDAVIGEPAPAVEKGDGGYADWVIVSIHCLREYLNQPYRRLLDILYEMPAIAAKLGLSVDQLPDFTTVCTRKQDLRMRIWRVLL
RLSVSLHELGDVQAIDATGFKRHQASRHYVLRVGYNFDDIKTTALVDCDTSVILDIHCSMKQPHDTQVGRQVLTRNRTRLSTIAADKSYDWDALRHELRD
AGIRPVIKHREFYALNKAHNARHNETVYHRRSIAEVIFFALKHRFGETLRARTWFGQFRELVLKTAVRNIEQAVKL
RLSVSLHELGDVQAIDATGFKRHQASRHYVLRVGYNFDDIKTTALVDCDTSVILDIHCSMKQPHDTQVGRQVLTRNRTRLSTIAADKSYDWDALRHELRD
AGIRPVIKHREFYALNKAHNARHNETVYHRRSIAEVIFFALKHRFGETLRARTWFGQFRELVLKTAVRNIEQAVKL
Blast result :
Comments
ISNma1 is 95% aa similar to ISHtu1.
References
1] ISfinder annotation (2010)
2] Siddaramappa,S., Challacombe,J.F., Decastro,R.E., Pfeiffer,F., Sastre,D.E., Gimenez,M.I., Paggi,R.A., Detter,J.C., Davenport,K.W., Goodwin,L.A., Kyrpides,N., Tapia,R., Pitluck,S., Lucas,S., Woyke,T. and Maupin-Furlow,J.A. (2012) BMC Genomics 13, 165
3] Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D., Goodwin,L., Pitluck,S., Davenport,K., Saunders,E., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., De Castro,R.E., Maupin-Furlow,J.A. and Woyke,T. (2010) Direct submission GenBank
2] Siddaramappa,S., Challacombe,J.F., Decastro,R.E., Pfeiffer,F., Sastre,D.E., Gimenez,M.I., Paggi,R.A., Detter,J.C., Davenport,K.W., Goodwin,L.A., Kyrpides,N., Tapia,R., Pitluck,S., Lucas,S., Woyke,T. and Maupin-Furlow,J.A. (2012) BMC Genomics 13, 165
3] Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D., Goodwin,L., Pitluck,S., Davenport,K., Saunders,E., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., De Castro,R.E., Maupin-Furlow,J.A. and Woyke,T. (2010) Direct submission GenBank