ISNph5

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1847 bp

Ends


Left end : CTTGATTCAGCGAGAGAATCCCGCCGTTCACGGCGGGCGTGAATCGCGTAAGCCCGGTTCGACAGTCCACGCGGTTTTGCCCGACCGAATACCCAACGGC II struct. : Yes
Right end : CAGATGACGCTCGGAGAGGTCGGGTCGGAACCCACTGCCGGTAGTTAGCCGGCATTCCCATGCAGGGAAGCCGCGCCGTGAACGGCGCGGAGGATGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ATCGCATCGAATCTATCTTCGCGCAGGtcac

DNA sequence

CTTGATTCAGCGAGAGAATCCCGCCGTTCACGGCGGGCGTGAATCGCGTAAGCCCGGTTCGACAGTCCACGCGGTTTTGCCCGACCGAATACCCAACGGC
ACAAGAGTTATTGAGATTGGGTGTCTTGTATTTGGTGAGGCCAAATGGAGTATCACCTGCAATCCGGGTCGCACACGGTCTACGCGCTTCAATATCACTT
CGTGACCGTCACGAAGTACCGCGCCGACATCCTCACCGATGAGCGGCTGGAGCGCGTGGCTGAAGTCGCTCACGAGATTGCAGAGGACTTCGAGGCCGAC
ATCAAGAACGTGGACGGCGGCACCGACCACGTTCACATTCTGTTCACGACCAAACCCACCACCGACCTCACGAAGTTCATCAACTCGCTCAAGGGCGTCA
CATCCCGCCGGATTCGCCAGGAGTACCCTGAGGTGAAACAGACGCTCGAAGATGCGTTCTGGCAGCCGGGGTATTTCCTCGCCACGACCGGTCAAGTGAG
CATCGACGTGCTGATGGACTACGTGGAAAACCAGTAGCATGACCGCGACAACCACGAAAACGCTGGAGGCCACGCTCGCCCCGCCGACAGCCCACAAAGA
GCGCAAACTGTGCGACCTGCTCGACACCTACCGGGCAGGACTCCACGAGGCGTTTGAGGCCGGGTGCGAGACGATGACCGCCACCAGCGACGTGGTGACT
CCCTACGACCTGCCGTATCAGGCGAAGGCGGCCCTGTGTAACTACGTTCCGCAACTGCACGGAACCTACGATGCACAGGAGTTGGACGACGACCACCCGG
TTCGGCTCACCAACCAAGCCGCTGAGTTCGACCATTCGCCGGAACGCGACTACGAGTTTACGTGGTGGGTACCACAGCCCGGTCGCGGGACGAACTTCTG
GATACCACTCCGTATCAACCCCGCTCAAGAAGAACTGTGGCACGACATCGTGGACGGTGAAGCGTCGGCAGGACAACTCCGCCTGCAACGTCACCGCACG
TCGTGGACGCTTCACGTCACCGTCGAGTTTCCGGTTAAAGAACCGGGCTACGAACCGACAGACGACGATGTAACACCAGTCGGCTTCGACATTGGCGAAG
CACACCTGCTCGCGGGCTGTGCCTGCGAGCAGGGCACTCCGACCGACCCACTACTCATCAACGGTGGCCGCGCTCGTCACCTCCGCAAAGAGATGCACAC
GACGCTCAAGCGCCTCCAAGAGCGTGACGCCGCCGAGTGGCGGATTGACGAACGGTTCGACCACTACCAGAACGCACTCACAGACATCATCGAAAAGGCG
TCTCGGCAGGCAATCGAGTACGCCTGCCGATTCGAGAAGCCTGTGGTCGTTCTGGAAGACCTCTCGTACATCCGCGAAGACCTCGATTACGGCGAGTGGA
TGAACCGACGCCTCCACGCATGGGCGTTCGCTCGCTTGCAGGAGCGCATCGAGGACAAAGCGCGAGAGTCTGGCATCCCGGTCGAATACATCCGCCCGGA
GTACACGAGCCAGACGTGCCACGAGTGCGGGCACATCGGGTATCGGGACGGCGATGAGTTCCGGTGTCAGAACGACGAGTGTTGGGTATCGGAGTACCAC
GCAGACATCAACGCGGCGGTCAACATCGCTGACCGCCACGACCCGTGGGGTGAGAGCCTGCCTCTGAAACCGGCGGGCGATGACATCTCACGGGATGGGA
GCGCCTGTGACAGCGCCGCGACCCCCACCGAACAGAGCCAACCACGGCAGATGACGCTCGGAGAGGTCGGGTCGGAACCCACTGCCGGTAGTTAGCCGGC
ATTCCCATGCAGGGAAGCCGCGCCGTGAACGGCGCGGAGGATGTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
393 bp130 aa145537+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MEYHLQSGSHTVYALQYHFVTVTKYRADILTDERLERVAEVAHEIAEDFEADIKNVDGGTDHVHILFTTKPTTDLTKFINSLKGVTSRRIRQEYPEVKQT
LEDAFWQPGYFLATTGQVSIDVLMDYVENQ

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1257 bp418 aa5391795+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MTATTTKTLEATLAPPTAHKERKLCDLLDTYRAGLHEAFEAGCETMTATSDVVTPYDLPYQAKAALCNYVPQLHGTYDAQELDDDHPVRLTNQAAEFDHS
PERDYEFTWWVPQPGRGTNFWIPLRINPAQEELWHDIVDGEASAGQLRLQRHRTSWTLHVTVEFPVKEPGYEPTDDDVTPVGFDIGEAHLLAGCACEQGT
PTDPLLINGGRARHLRKEMHTTLKRLQERDAAEWRIDERFDHYQNALTDIIEKASRQAIEYACRFEKPVVVLEDLSYIREDLDYGEWMNRRLHAWAFARL
QERIEDKARESGIPVEYIRPEYTSQTCHECGHIGYRDGDEFRCQNDECWVSEYHADINAAVNIADRHDPWGESLPLKPAGDDISRDGSACDSAATPTEQS
QPRQMTLGEVGSEPTAGS

 

Blast result :
Comments
ISNph5 is 96% (ORFA : the transposase) aa similar to ISH1-8 and 97% (ORFB) to ISH12.
ISNph5 has 90% sequence identity to ISH12 from Halobacterium.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J.,Oesterhelt D. (2005) Genome Res. 15: 1336-1343