ISNph10

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1359 bp

Ends


Left end : CAGCGGACAAGGCGAATACCCCGAGGCTTGACCTCGGGGATGAAGCCGACAACTCGTGATACAAACCATTAAGTTAACACATCCATAATCAAGAGACAGC II struct. : Yes
Right end : GAGACTGTGACCGCTACGGACACACCTGAATTTCAGTGTGTGTCTGCAAGTCACGTCGTGGAAACGGGAAGCCTCGGGGCTTGACCCCGAGGCGATTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GTCCCCGACTTTTATCCTCACCTGTTCAC
CGTTTGTCGCTTTATTTCAGGATGGtcac

DNA sequence

CAGCGGACAAGGCGAATACCCCGAGGCTTGACCTCGGGGATGAAGCCGACAACTCGTGATACAAACCATTAAGTTAACACATCCATAATCAAGAGACAGC
GATGGAACACAGTCACCGCTACCACGCCTACCCGACACAAGAGGTAGCGGAGCGGCTGGAACGCCATCTCGACGTTCATCGCCAGCTCTACAACCACATC
CGGTGGGAATACGAACAAGCCCCCGAAGACGACAAACCGAGTGAGTACGACCAAAACAACAAACTCCCCGGGTGGAAACGCAAGTGGCCCGTCTTCAGCG
AACTGCACTCGAAGGCCGCCCAAGCCACCGTTGCACGCTTCCACCGGAACCTCTCGAACCTTCGCAAAAAGAAAGAGAAAGGGTACAACGTTGGTCGGCT
CAAACGGCAAGCACCCACCGACTACCGGAGCGTGACGTACAACCAGTCCGGTTTCGACCTCGATGAAAAGAGGGGCCACGACAGGTATGCTCACGTTCGC
TTCAGCAAAATCGGTTGGGTGAAAATCCGTTACCACCGACCGATTCCAGACCACGCCACCATCAAAGAAGTCACGTTCAAGAAGGAGACGACTGGGGAGT
GGTTCGTCTCCTTCGGACTCGAAACCGACGACACAGACCTGCCCGAGAAAACAGACGTGGAGTCGCTCAACGCGAGCAACAGCGTTGGAATCGACCTTGG
CATTCTCAACTACATCCACACCAGCGATGGCAAGACCGTGGACTGGCTCGACCTCGAAGACGAGTACGAGCGTCTTCGCCGTGAACAGCGCAAGTTGTCG
CGGAAAGAGAGAGGGTCGAGTAACTACGAGAAGCAACGTCTGAAGGTCGCCAAGGTCAAGCGTCACATCAAGCGGAAGGTGCTGGACTACCAGCACAAAA
TCACGACGTGGCTCGTCAAAGAGTACGCCGCCGTATTCGTCGAGGAGTTGAACGTGAAGGGGATGCTTGAACAGTCGCACAACGCCCGCAACAAGCAGGA
CGCGGCGTGGCGACAGTTCATCACCCTCCTCGAATACAAGGCCGACCTGTACGGGTGCCACGTCGTTCAAGTCGAAGCCAGAGGCACGACGAAAGAGTGT
GCGTCGTGTGGTGTGGAGACGGCGAAACCCATCTGGGTCAGAAAACACTCCTGCCCGTCGTGTGGGTTCGAAACGGACAGAGACGCGAATGCGGCGATGA
ACGTGTTGCAGAGAGGCTTTTCTGAACTAGGGCTGGGATGGCCCGAAGACACGCCCGTGGAGACTGTGACCGCTACGGACACACCTGAATTTCAGTGTGT
GTCTGCAAGTCACGTCGTGGAAACGGGAAGCCTCGGGGCTTGACCCCGAGGCGATTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1242 bp413 aa1021343+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEHSHRYHAYPTQEVAERLERHLDVHRQLYNHIRWEYEQAPEDDKPSEYDQNNKLPGWKRKWPVFSELHSKAAQATVARFHRNLSNLRKKKEKGYNVGRL
KRQAPTDYRSVTYNQSGFDLDEKRGHDRYAHVRFSKIGWVKIRYHRPIPDHATIKEVTFKKETTGEWFVSFGLETDDTDLPEKTDVESLNASNSVGIDLG
ILNYIHTSDGKTVDWLDLEDEYERLRREQRKLSRKERGSSNYEKQRLKVAKVKRHIKRKVLDYQHKITTWLVKEYAAVFVEELNVKGMLEQSHNARNKQD
AAWRQFITLLEYKADLYGCHVVQVEARGTTKECASCGVETAKPIWVRKHSCPSCGFETDRDANAAMNVLQRGFSELGLGWPEDTPVETVTATDTPEFQCV
SASHVVETGSLGA

 

Blast result :
Comments
ISNph10 is 63% (ORFB) aa similar to ISHma12
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343