ISNph13

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
Natronomonas pharaonis DSM 2160 plasmid PL131
DNA section
IS Length : 1429 bp

Ends


Left end : GTGAAGAGAGGGCGCTAAGCCCCCGTCCTCAAGGAGCGACCAACGGGAGCGAGTAGGGCGGGGATACAGTGCCCGCACGACTATCAACCACGCTCAACCA II struct. : No
Right end : CTGTGGACTCGGTTTCCGTGTCTGCAAGTCGCGTCGTTGAATCAGGAAGCCCCTGCCTCAAGGAGCCTGCGAAGCAGGCGAGTAGGCAGGGGTAGTTCAC II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AGAAATGATTTTAGGTGAAGGTTC
CGATGGCGCGTTAGACACCGACGC

DNA sequence

GTGAAGAGAGGGCGCTAAGCCCCCGTCCTCAAGGAGCGACCAACGGGAGCGAGTAGGGCGGGGATACAGTGCCCGCACGACTATCAACCACGCTCAACCA
ACATGTTTAATAAACTATAAAGCGAAAACACAAGTACACGCGCATGGACTACAGCCCGCGTTTCAGACTCTTGCCAACAAGTAGACAGCGAGAGCTACTG
GGCTGGCAGCGTGACACCGTGCGCCAAGTCTACAACCATGCATTGTACCGGCTCGACCAACTCCCCGAACGCGCCGACCAAACCGTCCGCCAACGCGTCT
GGAGCGTTCGTGACGAACTCCCCGACTGGAAAACCAAGTGGGAGGAGTGGAGTAGCGTCTACTCCACCGTCCTCCAAGCCGCTGTGGAGCGTATCTACCA
CAGCATCACTGGACTCGCCCAGCAACGCGATAACGGGCACAAAATCGGGGACTTGAACTGGAAGAAGCCGCGAGAATTCCAGAGTTTCACGTATCGCCAG
CGGGGCTTCGAACTCGACAACAAGAGTGGCCCCGAGGGTCGTGGACTTTTAACACTCAAGAAAGTGCGTGGTAAGACGCTCGAAATCCCCATCCGAATTC
ACCGCGACATCGACCCGGACGACATCAAACACGTCACCGTCAAGCAAGAGGCGACGGGTGCGTGGTATACGTCGTTCAGCATAGACCGAGACGAACCAGA
GAAACCAGACCCCGAAGACATCGATCCCGAAGATACAGTGGGCCTCGACCTCGGCGTCCTCAACTTCATTCACGATTCGGACGGGCGGTCAATCAACCGT
CTCGACCTGTCTGACGACCGCGAACGCCTCGAACGCGAGCACCGGTCGCTCTCCCGCAAGGAATACGAGTCGAACAACTGGGAAAAGCAGCGCCAGCGCG
TCGCAGAGGTCCACATGGATATGCGGAACAAGAAACGCGATTACAAGCACAAACTCGCCCACGCGTACACGACCGAGTACGACGCCGTGTTCGTCGAGGA
CTTGGACGTGAAGCCGATGCTGGAAGATGATGGGAATGCCCGAAACAAAGCCGAGGTGGGCTGGCGCGACTTCATCCGTATTCTCAAGCATCACGGGCGG
AAACACGGCTGTCATGTGGTCGAAGTCGAACCAGCGGGGACGACGAAAGAGTGTGCCTCGTGTGGGGTGGAGACGGCGAAGCCATTGTGGGTTCGCGAAC
ACTCGTGTCCCGCGTGTGGCTTTGAGTTGGGCCGGGATTTCAACGCGTCGCTAAACGTTCTTTCTCGCGGTCTCGCCAAGCTAGGAGTGGGTCACTCCGA
AGCGACAACGCCTGCGGAGACTGCGACCGCTGTGGACTCGGTTTCCGTGTCTGCAAGTCGCGTCGTTGAATCAGGAAGCCCCTGCCTCAAGGAGCCTGCG
AAGCAGGCGAGTAGGCAGGGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1281 bp426 aa1441424+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MDYSPRFRLLPTSRQRELLGWQRDTVRQVYNHALYRLDQLPERADQTVRQRVWSVRDELPDWKTKWEEWSSVYSTVLQAAVERIYHSITGLAQQRDNGHK
IGDLNWKKPREFQSFTYRQRGFELDNKSGPEGRGLLTLKKVRGKTLEIPIRIHRDIDPDDIKHVTVKQEATGAWYTSFSIDRDEPEKPDPEDIDPEDTVG
LDLGVLNFIHDSDGRSINRLDLSDDRERLEREHRSLSRKEYESNNWEKQRQRVAEVHMDMRNKKRDYKHKLAHAYTTEYDAVFVEDLDVKPMLEDDGNAR
NKAEVGWRDFIRILKHHGRKHGCHVVEVEPAGTTKECASCGVETAKPLWVREHSCPACGFELGRDFNASLNVLSRGLAKLGVGHSEATTPAETATAVDSV
SVSASRVVESGSPCLKEPAKQASRQG

 

Blast result :
Comments
ISNph13 is 68% (ORFB) aa similar to ISHma12.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343