ISNph14

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1428 bp

Ends


Left end : CTGAAAGTGAGGGCGCTAAGCCCCCGTCCTCAAGGAGCGAGGCGAAGCCGAGCGAGTAGGGCGGGGATACAGCGCCCGCACGAGTTACAATCGTTTCAAT II struct. : No
Right end : TGTGGATACGCTTGCCGTATCTGCAAGTCGCGTCGTCGAAACAGGAAGCCCCTGCCTCAAAGAGGCGGCGCAAGCCGCCGAGTAGGCAGAGGTAGTTCAC II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AGTTGCCGGTTTAGCTGGGCCGGT

DNA sequence

CTGAAAGTGAGGGCGCTAAGCCCCCGTCCTCAAGGAGCGAGGCGAAGCCGAGCGAGTAGGGCGGGGATACAGCGCCCGCACGAGTTACAATCGTTTCAAT
CAGAATCCTTAACTAATGATAATTCGTAGCAGGAGCCACGTCGCATGAAGTACAGTCCACGCTACCGACTCTTCCCAACCGAAGAGCAACGGCAGGCGAT
GGACTGGCAACGCGACACCGTACGACAATTATACAACCACGCGCTCAGAGAATTCAACAAAATCCCCGAGGACGCCGGAACGCTCCGGCAACGCGTCTGG
ATGGTCCGCGACAGTATCCCCGAACTGAAAGACTGGTGGCCCGACCTGAAGCAAGTCTACTCCACCGTCTTACAGAAAGCCGTCGAACGCATCCGCGACA
ACATCAACAGCCTCGGCGAACTAAAAGAACAAGGCTACGACGTGGGGGCGCTGAACTGGAAGGCACCACGCGAATTCAGGAGTTTCACGTACCGTCAATC
CGGCTTCGAACTCAACAAGAAGAGTGGCCCCGACGGACACGCACTCCTTCAGCTAAAGAAACTCAAAGGCGAAAGTCGTGAGATACCAGTTCGACTCCAC
CGCGACCTCCCCGACCACAACGGCATCAAAGAGGTTGCGCTGAAAAAAGACGCAACGGGCGAGTGGTACGCGTCGTTCACCATCGACACCGACACCCCCG
AGAAACCCGAGCCGGGCAATATCGACGCGGAAGACACGGTGGGCCTTGACCTCGGCGTCTGCAACTTCATCCACGATTCGGACGGACGCTGCGTTGACCG
CCTCAACTTGTCAGGTGACCGCGAGCGACTCGAACGCGAGCAACGCTCGCTGTCACGGAAACAAAAAGGCTCGAACAACTGGGAGAAACAACGCCAACGC
GTCGCCGAAGTCCACGCGCGGATGTCGAACAAGAAACAGGACTTCAAGCACAAACTCGCACACTTCTACACCACCGAGTACGACGCCGTGTTCGTCGAAG
ACCTCGACGTGAAGAGGATGCTAGAAAGCCAGCAGAACGCCCGGAACAAGGCCGAGGTCGGGTGGCGTGACTTCCTTACCATTCTCGAACATCACGGCGA
CAAGAACGGCTGTCACGTCGTCGAAGTCGAAGCCCGAGGCACCACGAAAGAATGCGCCGAGTGCGGGGTTGAAACCGCGAAACCGCTGTGGGTCCGCGAG
CATTCCTGCCCAAGTTGTGGCTTCGAACTCGACCGTGATTGGAACGCTGCGTTGAACGTCCAACAACGCGGTTGGAATCGACTAGGAGTGGTTCACTCCG
AAGCTACGCCTGCGGAGACTGCAACCGCTGTGGATACGCTTGCCGTATCTGCAAGTCGCGTCGTCGAAACAGGAAGCCCCTGCCTCAAAGAGGCGGCGCA
AGCCGCCGAGTAGGCAGAGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1269 bp422 aa1451413+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKYSPRYRLFPTEEQRQAMDWQRDTVRQLYNHALREFNKIPEDAGTLRQRVWMVRDSIPELKDWWPDLKQVYSTVLQKAVERIRDNINSLGELKEQGYDV
GALNWKAPREFRSFTYRQSGFELNKKSGPDGHALLQLKKLKGESREIPVRLHRDLPDHNGIKEVALKKDATGEWYASFTIDTDTPEKPEPGNIDAEDTVG
LDLGVCNFIHDSDGRCVDRLNLSGDRERLEREQRSLSRKQKGSNNWEKQRQRVAEVHARMSNKKQDFKHKLAHFYTTEYDAVFVEDLDVKRMLESQQNAR
NKAEVGWRDFLTILEHHGDKNGCHVVEVEARGTTKECAECGVETAKPLWVREHSCPSCGFELDRDWNAALNVQQRGWNRLGVVHSEATPAETATAVDTLA
VSASRVVETGSPCLKEAAQAAE

 

Blast result :
Comments
ISNph14 is 66% (ORFB) aa similar to ISHma2.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343