ISNph17

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007427 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160 plasmid PL131
DNA section
IS Length : 1587 bp

Ends


Left end : GGAATATTCGAGGCGAAAGCCTCGCCCTTCAGGGCGGGGATGAAGCCGACATGACATACCACTTTCCACGTTACTTTAGCTTTTTGTAATCTCAACGTTT II struct. : Yes
Right end : AACCCAGCTTCAGCAAACCCGCAAGTTCACAGCCGGGGTAATCAACTGGTTGGATTACCCACGGAGGAATCCTCGCGCTTCAGCGCGGGGAGGAGGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ACGCGCCGATTTACTGATACGTGAtcaa

DNA sequence

GGAATATTCGAGGCGAAAGCCTCGCCCTTCAGGGCGGGGATGAAGCCGACATGACATACCACTTTCCACGTTACTTTAGCTTTTTGTAATCTCAACGTTT
ATGATATTTGACTGCATATAACTGCGTGTGAGCGACCGGCCACAGCGAACGAATACCTATACTGCCAACGCAACCAGCGACAGGTATCGGCAGTGTTTGT
TCGACTGGCTGGCCGCCCAGCCCCCGCTCTGGAATCAAATCACCTACCGCCGCCGACAAGCGTACTTCAGCGATGACGGTGACGTGTGGGACGCCGACTA
CACCGACCTCTACGACGAGTATGCTCCCATCATCGGGAAGGCGACGTGCCAGCAGATTGCTCGCAAGAATAGCGAAGCATGGCGCAGTCACTTCCGGTTG
CTTGAGCAGTACCACGACAACTCCAACACAACAGTGACAGAGAAACCCTCACCGCCAGGCTACTGGGGCAACCGGAAAGAGGGCTACGAGTTGCACGGCC
TCGTTCGCAACGACCTCTACACGCTCGATTGGGACGAAGACCGAAGTACACTCGAATTTGGCGTCGGTGATGTACTCAAAGACCGCTACGATTTCGAGCA
CAACGAGCGTGTCACGCTCGAAATCAAAGGCAACCCACAGTGGAATGGTGACGACAGCCGATTGGAACTCATCTACGACGACCACGCTGACCAGCTTCGT
GTCCAGCATCCTGTCCGCATTCAACCAGACAAGATTCGTGAACAGCGAGAGGATGCCTTCACTCATACACTCAACACCGAGAACACGACGCAGGCAGCCG
CTATCGACGTCGGTGCAAACAACACGTTGGCTGTTGTCACCGAACGTGGCGACACCGCTGTGTATCACGCCCGCCCAGAGTTTGCCCGGTTCCAGAGGTA
TTCAGAGCGAATCGCTACACTCCAGTCGGGGCTTCCAGCCGACAAATACACGAGTAGCCTAATTCAACGACTGTACGATACTCGATCACGGAGCCGTGAC
CACAGCCGGGATGCTGCGGTGAAACACGTTGCTGAGTGGCTGCTCGAACGCAACGTTGACACGGTGTACGTTGGGGATTTGACTGATGTGCTAGACACTC
ATTGGAGTACAGACGTGAACGAGAAGACGCACAATTTCTGGTCACATCGACAACTTCTCAACAGGATAGAGTTGACACTCGGTGATGTAGGTATCTGTGT
TGCGGAAGTGACTGAAGCCGACTCAAGCAGCGAGTGTCCCGAGTGTGGGAGTAGTGATATCACTCGGAGAGGCGATTCGTTCCGGTGTCACGACTGCGAG
CTAGACGCTCACAGTGACGTGGCAGGGGCGTGGAACATCTTGCAGTCTGAAGCAGGGCCGATGGCCCGGCCCGCTGCCCTGTCTGCTGAACGCGACAGGG
ACGCACCCCAAGAGGGAGCGTACTGGCAGTGGAACGAACACGACTGGATACCCGCTGATTTTGGGGAACAGTCGCGTTCAGTTGACCAACCCAGCTTCAG
CAAACCCGCAAGTTCACAGCCGGGGTAATCAACTGGTTGGATTACCCACGGAGGAATCCTCGCGCTTCAGCGCGGGGAGGAGGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1401 bp466 aa1281528+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSDRPQRTNTYTANATSDRYRQCLFDWLAAQPPLWNQITYRRRQAYFSDDGDVWDADYTDLYDEYAPIIGKATCQQIARKNSEAWRSHFRLLEQYHDNSN
TTVTEKPSPPGYWGNRKEGYELHGLVRNDLYTLDWDEDRSTLEFGVGDVLKDRYDFEHNERVTLEIKGNPQWNGDDSRLELIYDDHADQLRVQHPVRIQP
DKIREQREDAFTHTLNTENTTQAAAIDVGANNTLAVVTERGDTAVYHARPEFARFQRYSERIATLQSGLPADKYTSSLIQRLYDTRSRSRDHSRDAAVKH
VAEWLLERNVDTVYVGDLTDVLDTHWSTDVNEKTHNFWSHRQLLNRIELTLGDVGICVAEVTEADSSSECPECGSSDITRRGDSFRCHDCELDAHSDVAG
AWNILQSEAGPMARPAALSAERDRDAPQEGAYWQWNEHDWIPADFGEQSRSVDQPSFSKPASSQPG

 

Blast result :
Comments
ISNph17 is 48% (ORFB) aa similar to ISSto1.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343