ISAtsp4

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrospira sp.
Arthrospira sp. PCC 8005
DNA section
IS Length : 1138 bp

Ends


IR Length : 20/26

IRL : TCAAGTTCGCTTAATCGGTTATAATATCAGTGACCAATGCCAAACTTGCG
IRR : TCAAGTCCGGATAATCAATTATAGTAAAGTCTCGGTTTGAGGCCACCAAT

Insertion site


Left flankDirect repeatRight flankDR Length
TTCCCGGTCATATCAGCGGTCA2

DNA sequence

TCAAGTTCGCTTAATCGGTTATAATATCAGTGACCAATGCCAAACTTGCGTTATGCCCAGACGAATTAGTATAGCTCCCCACTTAAGTACCGAAGAACTT
GGCCGGGCTGATCACCAAGCCCAAGAGGGCTTGGAAAGTCGCCAATATCAAATTATTTGGTTGTTGGCTAAGGGGAAGACCACGGAGGAAGTCCAAGAAA
TTACGGGCTACAGTCGCATCTGGATTTATGAATTGGTAAAGAGATACAACCAATTGGGATTAAAAGGGCTGGGTGCGCGCCGAAAAGGAAATCCCGGACA
TCCACCGTTAATTGATGATGTGACTCAAGCTCAGTTATGGCAAGCCCTGCAAGGAACAGCGCCGGATGGGGGACTGTGGAACGGTCGCCAGGTGGCAGAC
TGGTTGACAGGAGTAACTGGACGAAAAATTAGCCGACAAAGGGGATGGGAGATTCTGCGACAAATGACATTTCGGCTTCGTGTACCGAGACCGGCTCACA
CCGAAAGTGACGAAGACGAGCAGCAAGCCTGGAAAAAAAAACTGGTAACGGAGTTAGAGGGACTTCGCCGGAGATACCCTGATGCACAGGTGCAATTGTG
GAGCGAAGATGAACACCGTCTGGGACTCAAACCGGTGATGCGACGTATTTATGTAGCGGAAGATTGTCAACCACTCGCCCATATTAATTGGAAATTCGAG
TGGTTATGGCTATATGGTTTTGTGAGACCGGAAACGGGAGAGACTTATTGGTGGATTATACCTTACGTCAATACAACTCTATTTAGTCGAGTGTTACAGG
AGTTTGCTGCCGAATTTAAATTAGGTCCAAATCAACACATTATGTTAGTGGTTGATCAAGCCGGATGGCATATCAGTAAGAATCTGAAAGTACCCGAAGG
ACTGCATTTAATGTTTCTACCGTCCCATTCCCCGGAACTACAACCAGCAGAAAGACTGTGGCCTCTGGTAGATGAACCCATTGCCAATCGTTCATTTGAG
AATCTTGATCAGCTAGAGGAACTCTTGTGTGCTCGCTGCCGAAGTTTGTGGAAACAGCGCTAATTAATTCGAGGCTTGACCAGTTTTCATTGGTGGCCTC
AAACCGAGACTTTACTATAATTGATTATCCGGACTTGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1011 bp336 aa531063+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPRRISIAPHLSTEELGRADHQAQEGLESRQYQIIWLLAKGKTTEEVQEITGYSRIWIYELVKRYNQLGLKGLGARRKGNPGHPPLIDDVTQAQLWQALQ
GTAPDGGLWNGRQVADWLTGVTGRKISRQRGWEILRQMTFRLRVPRPAHTESDEDEQQAWKKKLVTELEGLRRRYPDAQVQLWSEDEHRLGLKPVMRRIY
VAEDCQPLAHINWKFEWLWLYGFVRPETGETYWWIIPYVNTTLFSRVLQEFAAEFKLGPNQHIMLVVDQAGWHISKNLKVPEGLHLMFLPSHSPELQPAE
RLWPLVDEPIANRSFENLDQLEELLCARCRSLWKQR

 

Blast result :
Comments
ISAtsp4 is 60% aa similar to ISAva6.
References
1] ISfinder annotation (2009)
2] Morin Nicolas (2009) Direct submission