ISKra3
- Family ISAzo13
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ADVG01000001 | ND | Ktedonobacter racemifer | Ktedonobacter racemifer DSM 44963 |
DNA section
IS Length : 1287 bp
Ends
IR Length : 21/27
IRL : GGAGTCGTCAAGAAATAACGGTCGCAAGAGGAGATATGATAGACTGTGAG
IRR : GGAGTCGTCAAAGAAAAAAGGTATCAATTTGACGATTCCTTGGGATAGAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCGGGATTGC | TAA | GAGCATCATC | 3 |
DNA sequence
GGAGTCGTCAAGAAATAACGGTCGCAAGAGGAGATATGATAGACTGTGAGGCATGAAGGAAGAAGTAGCGATCAAGCAAAGATTCGAACAGGTATCTGGG
AAGCTGAATGAACGATCGAGGCGGTTGGTAGCAGCCAGTGAGGCGCTGGCTCTGGGATGGGGAGGGATTTCAGCCGTCTCTCGCGCAACGGGGCTCTCAC
GCAAGGCCATCAGCCATGGGATCAAGGAACTGCGGGAAGAAGAAGGGGGAAGAGAGGGACGTATTCGCCGCACAGGAGGTGGGCGCAAGACCACGGTGAG
CAAGGATGCGAGCCTGCGGGAAGACCTGGAGCAGTTGGTAGAGCCAGTGACGCGCGGAGACCCGGAGTCGCCTCTGCGGTGGACGTGTAAGAGCGTGCGC
AAGCTGGCCGAGGAACTGCGCAAGCGTGGGCACCAGGTATCCCACGAGTTGGTCAGCCAGTTGCTCCATGGGTTGGGCTACAGCTTACAGGCGAACCGCA
AGACGCGTGAGGGAGGAGACCACCCGGATCGCAATGTGCAGTTCGAGCATGTCAATGCCCAGGCGGAGGACTTTCTTGCAGCGGGCGAGCCGGTGGTGTC
AGTGGATGCCAAGAAGAAAGAACTGGTGGGCGAGTTCAAGAATCCTGGACGCGAATGGGGGCCGCAGGGGCAGCCGGAGGAGGTGCGGGTCTATGATTTC
CCCATTCCCGGCCTGGGACGCGCGACGCCCTACGGAGTGTACGATCTGGGGCAGAATGCGGGCTGGGTCAATGTGGGCATGGATCATGATACCGCTGCTT
TCGCGGTGGAAAGCATCCGACGCTGGTGGAAGACGGTTGGTCAGCATCAGTATCCCGATGCGAAACGGCTGCTGATCAGTGCTGATGGAGGAGGAAGTAA
CGGGTCGCGTGTACGCTTATGGAAATGGGAACTGCAACAGTTGGCGAATGAAACCGGTCTGGCGATCACCGTCTGCCATTTGCCTCCGGGAACCAGCAAA
TGGAACAAGATCGAGCATCGTCTCTTTGCCTGGATCAGCCAAAACTGGCGCAGCAAGCCGCTCACGAGCTATGCAGTGATCCTGCAATTGATCGCAGCGA
CCACAACCAAGGCTGGCTTGACCGTGCAGTGCCAACTCGATAGCAATCGCTATCCCGCTGGCCGTAAGGTGTCTGATGAAGAGATGGCGACGCTCTCCAT
TGTACCGGACCCTTTCCACGGCGAGTGGAATTACACCATCTATCCCAAGGAATCGTCAAATTGATACCTTTTTTCTTTGACGACTCC
AAGCTGAATGAACGATCGAGGCGGTTGGTAGCAGCCAGTGAGGCGCTGGCTCTGGGATGGGGAGGGATTTCAGCCGTCTCTCGCGCAACGGGGCTCTCAC
GCAAGGCCATCAGCCATGGGATCAAGGAACTGCGGGAAGAAGAAGGGGGAAGAGAGGGACGTATTCGCCGCACAGGAGGTGGGCGCAAGACCACGGTGAG
CAAGGATGCGAGCCTGCGGGAAGACCTGGAGCAGTTGGTAGAGCCAGTGACGCGCGGAGACCCGGAGTCGCCTCTGCGGTGGACGTGTAAGAGCGTGCGC
AAGCTGGCCGAGGAACTGCGCAAGCGTGGGCACCAGGTATCCCACGAGTTGGTCAGCCAGTTGCTCCATGGGTTGGGCTACAGCTTACAGGCGAACCGCA
AGACGCGTGAGGGAGGAGACCACCCGGATCGCAATGTGCAGTTCGAGCATGTCAATGCCCAGGCGGAGGACTTTCTTGCAGCGGGCGAGCCGGTGGTGTC
AGTGGATGCCAAGAAGAAAGAACTGGTGGGCGAGTTCAAGAATCCTGGACGCGAATGGGGGCCGCAGGGGCAGCCGGAGGAGGTGCGGGTCTATGATTTC
CCCATTCCCGGCCTGGGACGCGCGACGCCCTACGGAGTGTACGATCTGGGGCAGAATGCGGGCTGGGTCAATGTGGGCATGGATCATGATACCGCTGCTT
TCGCGGTGGAAAGCATCCGACGCTGGTGGAAGACGGTTGGTCAGCATCAGTATCCCGATGCGAAACGGCTGCTGATCAGTGCTGATGGAGGAGGAAGTAA
CGGGTCGCGTGTACGCTTATGGAAATGGGAACTGCAACAGTTGGCGAATGAAACCGGTCTGGCGATCACCGTCTGCCATTTGCCTCCGGGAACCAGCAAA
TGGAACAAGATCGAGCATCGTCTCTTTGCCTGGATCAGCCAAAACTGGCGCAGCAAGCCGCTCACGAGCTATGCAGTGATCCTGCAATTGATCGCAGCGA
CCACAACCAAGGCTGGCTTGACCGTGCAGTGCCAACTCGATAGCAATCGCTATCCCGCTGGCCGTAAGGTGTCTGATGAAGAGATGGCGACGCTCTCCAT
TGTACCGGACCCTTTCCACGGCGAGTGGAATTACACCATCTATCCCAAGGAATCGTCAAATTGATACCTTTTTTCTTTGACGACTCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1212 bp | 403 aa | 53 | 1264 | + | No |
Chemistry : Unknow
ORF sequence :
MKEEVAIKQRFEQVSGKLNERSRRLVAASEALALGWGGISAVSRATGLSRKAISHGIKELREEEGGREGRIRRTGGGRKTTVSKDASLREDLEQLVEPVT
RGDPESPLRWTCKSVRKLAEELRKRGHQVSHELVSQLLHGLGYSLQANRKTREGGDHPDRNVQFEHVNAQAEDFLAAGEPVVSVDAKKKELVGEFKNPGR
EWGPQGQPEEVRVYDFPIPGLGRATPYGVYDLGQNAGWVNVGMDHDTAAFAVESIRRWWKTVGQHQYPDAKRLLISADGGGSNGSRVRLWKWELQQLANE
TGLAITVCHLPPGTSKWNKIEHRLFAWISQNWRSKPLTSYAVILQLIAATTTKAGLTVQCQLDSNRYPAGRKVSDEEMATLSIVPDPFHGEWNYTIYPKE
SSN
RGDPESPLRWTCKSVRKLAEELRKRGHQVSHELVSQLLHGLGYSLQANRKTREGGDHPDRNVQFEHVNAQAEDFLAAGEPVVSVDAKKKELVGEFKNPGR
EWGPQGQPEEVRVYDFPIPGLGRATPYGVYDLGQNAGWVNVGMDHDTAAFAVESIRRWWKTVGQHQYPDAKRLLISADGGGSNGSRVRLWKWELQQLANE
TGLAITVCHLPPGTSKWNKIEHRLFAWISQNWRSKPLTSYAVILQLIAATTTKAGLTVQCQLDSNRYPAGRKVSDEEMATLSIVPDPFHGEWNYTIYPKE
SSN
Blast result :
Comments
ISKra3 is 78% aa similar to ISArch20.
References
1] ISfinder submission (2012)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,J., Schneider,S., Sikorski,J., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,J., Schneider,S., Sikorski,J., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank.