ISNha9
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007964 | ND | Nitrobacter hamburgensis | Nitrobacter hamburgensis X14 |
DNA section
IS Length : 1322 bp
Ends
IR Length : 29/32
IRL : GACACTGTCAGGAATTTCGTGTGCGGGCGTGCATAATGGGTAAAAAGGAT
IRR : GGGACTGTCAGGAATTTCGTGTGCGGGCGAGCGGTTGAACATTACGCCGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAATGCGACCA | CATCCGCC | TGCTTGGGGT | 8 |
| GCGGCCGCGG | TTGCGCCAC | CGGTCGTAG | 9 |
| GTGATCCGCC | GCTCGCTG/T | TGGCCGCGG | 10 |
DNA sequence
GACACTGTCAGGAATTTCGTGTGCGGGCGTGCATAATGGGTAAAAAGGATTCCCACTATGGCCCGACGCAAAGACCCTGCGATACCAAATGATCTTCTCG
ACCAGCTTCTGGCGGGAGGCGCAGCCAGTGCAGCCTTCGAACAGGGCGGCCTGCTGGATTCGCTCAAGAAGGCTCTGACCGAGCGCGCGCTAAACGCGGA
GATGGACCATCATCTGGCGAGCGGCGAAGACGCTGGCAATACGCGTAACGGCTACGGCCGCAAGACCGTGACGACGGAGACCGGCAAGCTGGAGATCGAC
ATACCGCGCGATCGCCAGTCGAGTTTCGATCCGCAGTTGATTGCCAAGTATCAGCGCCGTTTTCCCGGCTTCGACGACAAGATCGTGTCCATGTATGCGC
GCGGCATGAGCACCCGGGAGATCACCGGGCACCTGCGCGATCTGTACGGTATCGAGGTGTCGCCGGACCTGATCTCAACGGTGACGGACGCCGTTCTCGA
CGAAGTCGCCACCTGGCAGCAAAGACCACTCGATCCGGTTTATCCGCTGATCTTCTTCGATGCGATCCGGGTCAAGATCCGCGACGAAGGGATGGTCCGC
AACAAGGCCATCCACATCGCGCTGGGGGTCCGCGCCGACGGCGCCAAGGAGGTGCTCGGCCTGTGGCTCGAGCAGAACGAAGGCGCCAAATTCTGGCTGC
GGGTGATGAACGAGCTCAAGAACCGCGGCGTCGATGATATCCTGCTGGCCGTCGTTGATGGCCTGAAGGGCTTCCCCGATGCGATCACCGCTGTGTTCCC
GGAGGCGGTCGTCCAGACGTGCATCGTCCACCTGCTGCGCAACTCCATGGACTTCGTGTCCTGGAAAGACCGCAAGGGGCTGGCGACAGCGCTCAAGGAC
ATCTACCGCGCCGTCGATGCCGATGCTGCCGAAAAGGCGCTGGCGGCGTTCGAGGCCGGCCCCTGGGGCCAGCGCTACCCCGCCATCGGCCAGAGCTGGC
GGCGCGCCTGGGGCGAGGTCATCCCGTTCTTTGCCTTCCCTGACGAGGTGCGTCGGATCGTCTACACAACAAACTCAATAGAAGCGCTGAACTCGAAACT
CCGGCGGGCTGTCAGGGCCAGAGGCCACTTCCCCAGCGACGACGCGGCAACCAAGCTGCTCTATCTGATCTTGAACCGATCGGAGAAAGAGTGGAAAATG
CCGCCTCGTGAGTGGACCATGGCCAAGGCCCAGTTCGCCGTCATCTTCGGCGAGCGCTTCATCAAAGCCATGGCGGCGTAATGTTCAACCGCTCGCCCGC
ACACGAAATTCCTGACAGTCCC
ACCAGCTTCTGGCGGGAGGCGCAGCCAGTGCAGCCTTCGAACAGGGCGGCCTGCTGGATTCGCTCAAGAAGGCTCTGACCGAGCGCGCGCTAAACGCGGA
GATGGACCATCATCTGGCGAGCGGCGAAGACGCTGGCAATACGCGTAACGGCTACGGCCGCAAGACCGTGACGACGGAGACCGGCAAGCTGGAGATCGAC
ATACCGCGCGATCGCCAGTCGAGTTTCGATCCGCAGTTGATTGCCAAGTATCAGCGCCGTTTTCCCGGCTTCGACGACAAGATCGTGTCCATGTATGCGC
GCGGCATGAGCACCCGGGAGATCACCGGGCACCTGCGCGATCTGTACGGTATCGAGGTGTCGCCGGACCTGATCTCAACGGTGACGGACGCCGTTCTCGA
CGAAGTCGCCACCTGGCAGCAAAGACCACTCGATCCGGTTTATCCGCTGATCTTCTTCGATGCGATCCGGGTCAAGATCCGCGACGAAGGGATGGTCCGC
AACAAGGCCATCCACATCGCGCTGGGGGTCCGCGCCGACGGCGCCAAGGAGGTGCTCGGCCTGTGGCTCGAGCAGAACGAAGGCGCCAAATTCTGGCTGC
GGGTGATGAACGAGCTCAAGAACCGCGGCGTCGATGATATCCTGCTGGCCGTCGTTGATGGCCTGAAGGGCTTCCCCGATGCGATCACCGCTGTGTTCCC
GGAGGCGGTCGTCCAGACGTGCATCGTCCACCTGCTGCGCAACTCCATGGACTTCGTGTCCTGGAAAGACCGCAAGGGGCTGGCGACAGCGCTCAAGGAC
ATCTACCGCGCCGTCGATGCCGATGCTGCCGAAAAGGCGCTGGCGGCGTTCGAGGCCGGCCCCTGGGGCCAGCGCTACCCCGCCATCGGCCAGAGCTGGC
GGCGCGCCTGGGGCGAGGTCATCCCGTTCTTTGCCTTCCCTGACGAGGTGCGTCGGATCGTCTACACAACAAACTCAATAGAAGCGCTGAACTCGAAACT
CCGGCGGGCTGTCAGGGCCAGAGGCCACTTCCCCAGCGACGACGCGGCAACCAAGCTGCTCTATCTGATCTTGAACCGATCGGAGAAAGAGTGGAAAATG
CCGCCTCGTGAGTGGACCATGGCCAAGGCCCAGTTCGCCGTCATCTTCGGCGAGCGCTTCATCAAAGCCATGGCGGCGTAATGTTCAACCGCTCGCCCGC
ACACGAAATTCCTGACAGTCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1224 bp | 407 aa | 58 | 1281 | + | No |
Chemistry : DDE
ORF sequence :
MARRKDPAIPNDLLDQLLAGGAASAAFEQGGLLDSLKKALTERALNAEMDHHLASGEDAGNTRNGYGRKTVTTETGKLEIDIPRDRQSSFDPQLIAKYQR
RFPGFDDKIVSMYARGMSTREITGHLRDLYGIEVSPDLISTVTDAVLDEVATWQQRPLDPVYPLIFFDAIRVKIRDEGMVRNKAIHIALGVRADGAKEVL
GLWLEQNEGAKFWLRVMNELKNRGVDDILLAVVDGLKGFPDAITAVFPEAVVQTCIVHLLRNSMDFVSWKDRKGLATALKDIYRAVDADAAEKALAAFEA
GPWGQRYPAIGQSWRRAWGEVIPFFAFPDEVRRIVYTTNSIEALNSKLRRAVRARGHFPSDDAATKLLYLILNRSEKEWKMPPREWTMAKAQFAVIFGER
FIKAMAA
RFPGFDDKIVSMYARGMSTREITGHLRDLYGIEVSPDLISTVTDAVLDEVATWQQRPLDPVYPLIFFDAIRVKIRDEGMVRNKAIHIALGVRADGAKEVL
GLWLEQNEGAKFWLRVMNELKNRGVDDILLAVVDGLKGFPDAITAVFPEAVVQTCIVHLLRNSMDFVSWKDRKGLATALKDIYRAVDADAAEKALAAFEA
GPWGQRYPAIGQSWRRAWGEVIPFFAFPDEVRRIVYTTNSIEALNSKLRRAVRARGHFPSDDAATKLLYLILNRSEKEWKMPPREWTMAKAQFAVIFGER
FIKAMAA
Blast result :
Comments
ISNha9 is 88% aa similar to ISAzs19.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ward,B., Arp,D., Klotz,M., Stein,L., O'Mullan,G., Starkenburg,S., Sayavedra,L., Poret-Peterson,A.T., Gentry,M.E., Bruce,D. and Richardson,P. (2008) Appl. Environ. Microbiol. 74 (9), 2852-2863 .
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ward,B., Arp,D., Klotz,M., Stein,L., O'Mullan,G., Starkenburg,S., Sayavedra,L., Poret-Peterson,A.T., Gentry,M.E., Bruce,D. and Richardson,P. (2008) Appl. Environ. Microbiol. 74 (9), 2852-2863 .