ISApr14
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABHC01000019.1 | ND | alpha proteobacterium | alpha proteobacterium BAL199 |
DNA section
IS Length : 1316 bp
Ends
IR Length : 32
IRL : GGGAGTGTCAGGAATTTCGTGTGCGGAGGAGCATGATGGGAAAGAAGGAG
IRR : GGGAGTGTCAGGAATTTCGTGTGCGGAGGAGCGGTTGAACATCAGACCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTCGGGGCA | CTTCGGCC | CGGAGCTTCG | 8 |
DNA sequence
GGGAGTGTCAGGAATTTCGTGTGCGGAGGAGCATGATGGGAAAGAAGGAGATCCCCCATGCCCCGACGCAAACCACCTGTTATTGCCGACGCCGTTCTCG
ATCAATTGCTGGCTGGTGCGGACGCCCGCACGGCCTTCGAGGCTGACGGTCTGCTGGATCAGCTGAAGAAGGCGCTGGCCGAGCGCGCCTTGAACGCTGA
GATGGATCATCATCTGAGCAATGGTGATCCTGGGAACAACCGGAACGGCTACGGCCGGAAGACGGTGACGACCGGCACCGGAAAGATCGAGCTGGAGATC
CCCCGCGATCGGGCCGGCAGCTTCGATCCGGCGCTGATCGCCAAATACCAGCGCCGGTTCCCGGATTTCGACGATAAGATCATCTCGATGTACGCCCGCG
GCATGAGCACGCGCGAGATCGCCGGCCATGTCCGTGAACTCTATGGCATCGATGTCTCGGCAGATCTGATCAGTGCTGTCACCGACGCCGTGCTCGAGGA
GCTGGCGGCCTGGCAGGCGCGGCCGCTCGAAGCGGTCTATCCTCTGGTGTTCTTCGATGCTCTGCGGGTGAAGATCCGGGACGAGGGGACCGTCCGGAAC
AAGGCCGTCCACATCGCTTTGGGCGTGCGCGCGGACGGTGCGAAGGACGTGCTCGGCCTTTGGCTGGAGCAGAACGAGGGTGCGAAGTTCTGGCTCCGGG
TTATGAACGAGCTCAGGAACCGGGGCGTCGAGGATGTGCTCCTGGCCGTCGTCGACGGACTCAAGGGCTTCCCGGAGGCGATCACCGCGGTCTTTCCCGA
TGCCATGGTGCAAACGTGCATCGTCCATCTGCTGCGCCACAGCCTCGACTTCGTCTCCTGGAAGGATCGCAAGCTCGTCGCCGCCGCGCTGAAGGAGATC
TACCGGGCGATCGATGCTGACGCCGGTCAGGCCGCGTTGCAGGCCTTCGAGGACGGCTCTTGGGGGCGCAAATACCCCGCCATCGCTCAGAGTTGGCGAC
GGGCCTGGGCGGAGGTGATCCCCTTCTATGGTTTCGCCGAGGAGGTTCGCAGGATCATCTACACCACGAACTCCATCGAGGCGCTGAACGCAAAGCTGCG
ACGTGCCGTGCGTGCCCGGGGACATTTCCCCAACGATGATGCCGCTGCCAAGCTGCTGTTCCTTGTCTTGAACAGAGCCGAGAAAGAGTGGACCATGCCG
CCCAGGGAGTGGGCCATGGCAAAGGCACAGTTCGCCGTCATCTTCGGCGAACGCTTCAAAAGAGCTATGGTCTGATGTTCAACCGCTCCTCCGCACACGA
AATTCCTGACACTCCC
ATCAATTGCTGGCTGGTGCGGACGCCCGCACGGCCTTCGAGGCTGACGGTCTGCTGGATCAGCTGAAGAAGGCGCTGGCCGAGCGCGCCTTGAACGCTGA
GATGGATCATCATCTGAGCAATGGTGATCCTGGGAACAACCGGAACGGCTACGGCCGGAAGACGGTGACGACCGGCACCGGAAAGATCGAGCTGGAGATC
CCCCGCGATCGGGCCGGCAGCTTCGATCCGGCGCTGATCGCCAAATACCAGCGCCGGTTCCCGGATTTCGACGATAAGATCATCTCGATGTACGCCCGCG
GCATGAGCACGCGCGAGATCGCCGGCCATGTCCGTGAACTCTATGGCATCGATGTCTCGGCAGATCTGATCAGTGCTGTCACCGACGCCGTGCTCGAGGA
GCTGGCGGCCTGGCAGGCGCGGCCGCTCGAAGCGGTCTATCCTCTGGTGTTCTTCGATGCTCTGCGGGTGAAGATCCGGGACGAGGGGACCGTCCGGAAC
AAGGCCGTCCACATCGCTTTGGGCGTGCGCGCGGACGGTGCGAAGGACGTGCTCGGCCTTTGGCTGGAGCAGAACGAGGGTGCGAAGTTCTGGCTCCGGG
TTATGAACGAGCTCAGGAACCGGGGCGTCGAGGATGTGCTCCTGGCCGTCGTCGACGGACTCAAGGGCTTCCCGGAGGCGATCACCGCGGTCTTTCCCGA
TGCCATGGTGCAAACGTGCATCGTCCATCTGCTGCGCCACAGCCTCGACTTCGTCTCCTGGAAGGATCGCAAGCTCGTCGCCGCCGCGCTGAAGGAGATC
TACCGGGCGATCGATGCTGACGCCGGTCAGGCCGCGTTGCAGGCCTTCGAGGACGGCTCTTGGGGGCGCAAATACCCCGCCATCGCTCAGAGTTGGCGAC
GGGCCTGGGCGGAGGTGATCCCCTTCTATGGTTTCGCCGAGGAGGTTCGCAGGATCATCTACACCACGAACTCCATCGAGGCGCTGAACGCAAAGCTGCG
ACGTGCCGTGCGTGCCCGGGGACATTTCCCCAACGATGATGCCGCTGCCAAGCTGCTGTTCCTTGTCTTGAACAGAGCCGAGAAAGAGTGGACCATGCCG
CCCAGGGAGTGGGCCATGGCAAAGGCACAGTTCGCCGTCATCTTCGGCGAACGCTTCAAAAGAGCTATGGTCTGATGTTCAACCGCTCCTCCGCACACGA
AATTCCTGACACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1170 bp | 389 aa | 106 | 1275 | + | No |
Description :
ORF sequence :
MLAGADARTAFEADGLLDQLKKALAERALNAEMDHHLSNGDPGNNRNGYGRKTVTTGTGKIELEIPRDRAGSFDPALIAKYQRRFPDFDDKIISMYARGM
STREIAGHVRELYGIDVSADLISAVTDAVLEELAAWQARPLEAVYPLVFFDALRVKIRDEGTVRNKAVHIALGVRADGAKDVLGLWLEQNEGAKFWLRVM
NELRNRGVEDVLLAVVDGLKGFPEAITAVFPDAMVQTCIVHLLRHSLDFVSWKDRKLVAAALKEIYRAIDADAGQAALQAFEDGSWGRKYPAIAQSWRRA
WAEVIPFYGFAEEVRRIIYTTNSIEALNAKLRRAVRARGHFPNDDAAAKLLFLVLNRAEKEWTMPPREWAMAKAQFAVIFGERFKRAMV
STREIAGHVRELYGIDVSADLISAVTDAVLEELAAWQARPLEAVYPLVFFDALRVKIRDEGTVRNKAVHIALGVRADGAKDVLGLWLEQNEGAKFWLRVM
NELRNRGVEDVLLAVVDGLKGFPEAITAVFPDAMVQTCIVHLLRHSLDFVSWKDRKLVAAALKEIYRAIDADAGQAALQAFEDGSWGRKYPAIAQSWRRA
WAEVIPFYGFAEEVRRIIYTTNSIEALNAKLRRAVRARGHFPNDDAAAKLLFLVLNRAEKEWTMPPREWAMAKAQFAVIFGERFKRAMV
Blast result :
Comments
ISApr14 is 91% aa similar to ISNha9.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct GenBank submission.
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct GenBank submission.