ISApr14

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABHC01000019.1 ND alpha proteobacterium
alpha proteobacterium BAL199
DNA section
IS Length : 1316 bp

Ends


IR Length : 32

IRL : GGGAGTGTCAGGAATTTCGTGTGCGGAGGAGCATGATGGGAAAGAAGGAG
IRR : GGGAGTGTCAGGAATTTCGTGTGCGGAGGAGCGGTTGAACATCAGACCAT

Insertion site


Left flankDirect repeatRight flankDR Length
TGTCGGGGCACTTCGGCCCGGAGCTTCG8

DNA sequence

GGGAGTGTCAGGAATTTCGTGTGCGGAGGAGCATGATGGGAAAGAAGGAGATCCCCCATGCCCCGACGCAAACCACCTGTTATTGCCGACGCCGTTCTCG
ATCAATTGCTGGCTGGTGCGGACGCCCGCACGGCCTTCGAGGCTGACGGTCTGCTGGATCAGCTGAAGAAGGCGCTGGCCGAGCGCGCCTTGAACGCTGA
GATGGATCATCATCTGAGCAATGGTGATCCTGGGAACAACCGGAACGGCTACGGCCGGAAGACGGTGACGACCGGCACCGGAAAGATCGAGCTGGAGATC
CCCCGCGATCGGGCCGGCAGCTTCGATCCGGCGCTGATCGCCAAATACCAGCGCCGGTTCCCGGATTTCGACGATAAGATCATCTCGATGTACGCCCGCG
GCATGAGCACGCGCGAGATCGCCGGCCATGTCCGTGAACTCTATGGCATCGATGTCTCGGCAGATCTGATCAGTGCTGTCACCGACGCCGTGCTCGAGGA
GCTGGCGGCCTGGCAGGCGCGGCCGCTCGAAGCGGTCTATCCTCTGGTGTTCTTCGATGCTCTGCGGGTGAAGATCCGGGACGAGGGGACCGTCCGGAAC
AAGGCCGTCCACATCGCTTTGGGCGTGCGCGCGGACGGTGCGAAGGACGTGCTCGGCCTTTGGCTGGAGCAGAACGAGGGTGCGAAGTTCTGGCTCCGGG
TTATGAACGAGCTCAGGAACCGGGGCGTCGAGGATGTGCTCCTGGCCGTCGTCGACGGACTCAAGGGCTTCCCGGAGGCGATCACCGCGGTCTTTCCCGA
TGCCATGGTGCAAACGTGCATCGTCCATCTGCTGCGCCACAGCCTCGACTTCGTCTCCTGGAAGGATCGCAAGCTCGTCGCCGCCGCGCTGAAGGAGATC
TACCGGGCGATCGATGCTGACGCCGGTCAGGCCGCGTTGCAGGCCTTCGAGGACGGCTCTTGGGGGCGCAAATACCCCGCCATCGCTCAGAGTTGGCGAC
GGGCCTGGGCGGAGGTGATCCCCTTCTATGGTTTCGCCGAGGAGGTTCGCAGGATCATCTACACCACGAACTCCATCGAGGCGCTGAACGCAAAGCTGCG
ACGTGCCGTGCGTGCCCGGGGACATTTCCCCAACGATGATGCCGCTGCCAAGCTGCTGTTCCTTGTCTTGAACAGAGCCGAGAAAGAGTGGACCATGCCG
CCCAGGGAGTGGGCCATGGCAAAGGCACAGTTCGCCGTCATCTTCGGCGAACGCTTCAAAAGAGCTATGGTCTGATGTTCAACCGCTCCTCCGCACACGA
AATTCCTGACACTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1170 bp389 aa1061275+No
ORF function : Transposase
Description :

ORF sequence :

MLAGADARTAFEADGLLDQLKKALAERALNAEMDHHLSNGDPGNNRNGYGRKTVTTGTGKIELEIPRDRAGSFDPALIAKYQRRFPDFDDKIISMYARGM
STREIAGHVRELYGIDVSADLISAVTDAVLEELAAWQARPLEAVYPLVFFDALRVKIRDEGTVRNKAVHIALGVRADGAKDVLGLWLEQNEGAKFWLRVM
NELRNRGVEDVLLAVVDGLKGFPEAITAVFPDAMVQTCIVHLLRHSLDFVSWKDRKLVAAALKEIYRAIDADAGQAALQAFEDGSWGRKYPAIAQSWRRA
WAEVIPFYGFAEEVRRIIYTTNSIEALNAKLRRAVRARGHFPNDDAAAKLLFLVLNRAEKEWTMPPREWAMAKAQFAVIFGERFKRAMV

 

Blast result :
Comments
ISApr14 is 91% aa similar to ISNha9.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct GenBank submission.