ISNml4
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013235 | ND | Nakamurella multipartita | Nakamurella multipartita DSM 44233 |
DNA section
IS Length : 1462 bp
Ends
IR Length : 25/32
IRL : GACCTGTCAGATGGACTGTGTAAGGGGTGTGGCATCTAGCGTCTGAGGAG
IRR : GAGCCTGTCAAGTCCTTTGTGTAAGGGGTGTGACGGGGGTTACAGGTGGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGGTCTGGTC | GATGCGCCG | GCACCGCAGG | 9 |
DNA sequence
GACCTGTCAGATGGACTGTGTAAGGGGTGTGGCATCTAGCGTCTGAGGAGTAGCTGTGACGATTGATGGCATGCCGAGATTGACCCCGCAGGAGCGGGCC
GAGCGTCGTCGGGTGCAGGCTGAGTTGGCTGCGGATCTGAAGGCCTCGGGTGCGCTGGACGGGGTGTTCGCCCGCATCGATGCCGGGGAGCCGCTGACCG
GCGACAGCGGGGTGCTGGGCGGGATGCTCAAGGCTGCGTTGGAACGCGGTCTGGAAGCGGAGCTGACCGACCACGTCGGCTACGACAAGGGCGCCGTGGA
CGCGGCCGAGTACGACAATTCCCGCAACGGTCACTACGCCAAGACGGTGTCCAGCGAGATCGGTGACATCGAATTGCGGGTCCCTCGGGACCGGGCCGGG
ACGTTCACCCCGATGCTGGTCGGCAAGGGGCAGCGCCGGCTGGACGGCATCGACGGGATGATCATCTCGCTGTACGCGGGCGGGATGACGTTGCGGGACA
TCGCCCACCACCTGGCGACCACGGTCGGGGTGGACCTGTCCCACGAGACGATCAGCAAGATCGTGGACGCGGTCGCCGACGAGGTCCTGGCCTGGCAGCG
CCGTCCGTTGGAGCCGATCTACCCGGTGATCTATCTGGACGCCATCACCGTCAAGATCAAAGACGGCGGACACGTGGTGAACAAGGCCGCGAACCTGGCC
GTCGGGGTCGACATGGAAGGTATCAAGCACGTTCTCGGGATCTGGGTGCAAACCCATGAGGGCGCCAAGTTCTGGGCCGGGGTGTGCGCCGACCTGGCCA
ACCGCGGCGTGCAAGACGTGCTGATCGTGTGCTGTGACGGGCTCACAGGGTTCCCCGAGGCCATCGCGGCGACCTGGCCGGCCGCGACCGTGCAAACCTG
CGTGGTCCACCTGATCCGCGCGTCGATGCGGTTCGTGTCCTACGGCGACCGCAAAGCCGTCGCTGCCGCGGTCAAACCGATCTACACCGCCAGCTCCGAA
GAGGACGCCCTCGCCGCCTTGGAGGCGTTCCGGGACGGGCCCTGGGGGTCGAAGTACCCGTCGGCGGTCCGCTCGTTCCAGGCGGCGTGGGACCGGTTCA
CCCCGTTCCTGGCGTTCCCGCCGGCCCTGCGCCGGGTCATCTACACCACCAACGCGATCGAGTCGCTGAACTATCAGTTGCGCAAGGTCACCAAGAACCG
CGGCCACTTCCCCAACGACGCAGCCGCGGTCAAGCTGCTGTGGTTGGCGATCTGCAACATCGAGGACAAACGAGCCCGCGACCGGGAGAAAGAGCGCGGA
CTACCCGCCGCCGACCGACGAGCGTCCGGACGCCTCATCCAAGGCGCCGTCACCACCAACTGGAAAGCAGCGCTGGCCCAACTCGCCCTGGTCTATCCCG
ACCGAATCGAACCCCACCTGTAACCCCCGTCACACCCCTTACACAAAGGACTTGACAGGCTC
GAGCGTCGTCGGGTGCAGGCTGAGTTGGCTGCGGATCTGAAGGCCTCGGGTGCGCTGGACGGGGTGTTCGCCCGCATCGATGCCGGGGAGCCGCTGACCG
GCGACAGCGGGGTGCTGGGCGGGATGCTCAAGGCTGCGTTGGAACGCGGTCTGGAAGCGGAGCTGACCGACCACGTCGGCTACGACAAGGGCGCCGTGGA
CGCGGCCGAGTACGACAATTCCCGCAACGGTCACTACGCCAAGACGGTGTCCAGCGAGATCGGTGACATCGAATTGCGGGTCCCTCGGGACCGGGCCGGG
ACGTTCACCCCGATGCTGGTCGGCAAGGGGCAGCGCCGGCTGGACGGCATCGACGGGATGATCATCTCGCTGTACGCGGGCGGGATGACGTTGCGGGACA
TCGCCCACCACCTGGCGACCACGGTCGGGGTGGACCTGTCCCACGAGACGATCAGCAAGATCGTGGACGCGGTCGCCGACGAGGTCCTGGCCTGGCAGCG
CCGTCCGTTGGAGCCGATCTACCCGGTGATCTATCTGGACGCCATCACCGTCAAGATCAAAGACGGCGGACACGTGGTGAACAAGGCCGCGAACCTGGCC
GTCGGGGTCGACATGGAAGGTATCAAGCACGTTCTCGGGATCTGGGTGCAAACCCATGAGGGCGCCAAGTTCTGGGCCGGGGTGTGCGCCGACCTGGCCA
ACCGCGGCGTGCAAGACGTGCTGATCGTGTGCTGTGACGGGCTCACAGGGTTCCCCGAGGCCATCGCGGCGACCTGGCCGGCCGCGACCGTGCAAACCTG
CGTGGTCCACCTGATCCGCGCGTCGATGCGGTTCGTGTCCTACGGCGACCGCAAAGCCGTCGCTGCCGCGGTCAAACCGATCTACACCGCCAGCTCCGAA
GAGGACGCCCTCGCCGCCTTGGAGGCGTTCCGGGACGGGCCCTGGGGGTCGAAGTACCCGTCGGCGGTCCGCTCGTTCCAGGCGGCGTGGGACCGGTTCA
CCCCGTTCCTGGCGTTCCCGCCGGCCCTGCGCCGGGTCATCTACACCACCAACGCGATCGAGTCGCTGAACTATCAGTTGCGCAAGGTCACCAAGAACCG
CGGCCACTTCCCCAACGACGCAGCCGCGGTCAAGCTGCTGTGGTTGGCGATCTGCAACATCGAGGACAAACGAGCCCGCGACCGGGAGAAAGAGCGCGGA
CTACCCGCCGCCGACCGACGAGCGTCCGGACGCCTCATCCAAGGCGCCGTCACCACCAACTGGAAAGCAGCGCTGGCCCAACTCGCCCTGGTCTATCCCG
ACCGAATCGAACCCCACCTGTAACCCCCGTCACACCCCTTACACAAAGGACTTGACAGGCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1368 bp | 455 aa | 56 | 1423 | + | No |
Chemistry : DDE
ORF sequence :
MTIDGMPRLTPQERAERRRVQAELAADLKASGALDGVFARIDAGEPLTGDSGVLGGMLKAALERGLEAELTDHVGYDKGAVDAAEYDNSRNGHYAKTVSS
EIGDIELRVPRDRAGTFTPMLVGKGQRRLDGIDGMIISLYAGGMTLRDIAHHLATTVGVDLSHETISKIVDAVADEVLAWQRRPLEPIYPVIYLDAITVK
IKDGGHVVNKAANLAVGVDMEGIKHVLGIWVQTHEGAKFWAGVCADLANRGVQDVLIVCCDGLTGFPEAIAATWPAATVQTCVVHLIRASMRFVSYGDRK
AVAAAVKPIYTASSEEDALAALEAFRDGPWGSKYPSAVRSFQAAWDRFTPFLAFPPALRRVIYTTNAIESLNYQLRKVTKNRGHFPNDAAAVKLLWLAIC
NIEDKRARDREKERGLPAADRRASGRLIQGAVTTNWKAALAQLALVYPDRIEPHL
EIGDIELRVPRDRAGTFTPMLVGKGQRRLDGIDGMIISLYAGGMTLRDIAHHLATTVGVDLSHETISKIVDAVADEVLAWQRRPLEPIYPVIYLDAITVK
IKDGGHVVNKAANLAVGVDMEGIKHVLGIWVQTHEGAKFWAGVCADLANRGVQDVLIVCCDGLTGFPEAIAATWPAATVQTCVVHLIRASMRFVSYGDRK
AVAAAVKPIYTASSEEDALAALEAFRDGPWGSKYPSAVRSFQAAWDRFTPFLAFPPALRRVIYTTNAIESLNYQLRKVTKNRGHFPNDAAAVKLLWLAIC
NIEDKRARDREKERGLPAADRRASGRLIQGAVTTNWKAALAQLALVYPDRIEPHL
Blast result :
Comments
ISNml4 is 77% aa similar to ISAar6.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Tice,H., Mayilraj,S., Sims,D., Lapidus,A., Nolan,M., Lucas,S., Glavina Del Rio,T., Copeland,A., Cheng,J.F., Meincke,L., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Chen,F. (2010) Stand Genomic Sci 2 (2), 168-175.
2] Tice,H., Mayilraj,S., Sims,D., Lapidus,A., Nolan,M., Lucas,S., Glavina Del Rio,T., Copeland,A., Cheng,J.F., Meincke,L., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Chen,F. (2010) Stand Genomic Sci 2 (2), 168-175.