ISActu1
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AGWQ01000008.1 | ND | Actinomyces turicensis | Actinomyces turicensis ACS-279-V-Col4 |
DNA section
IS Length : 1440 bp
Ends
IR Length : 21/28
IRL : GAGGGTGTCGGAAGTTTTGTGTATGAGGTTTAATCCTCAATCACGAAGGA
IRR : GAGGGTGTCAGTCCGTTTGTGTACGGGGACTGATTTACAAGTATGCGGCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTGATCGTCA | CACACTCC | AAACTCTGGA | 8 |
DNA sequence
GAGGGTGTCGGAAGTTTTGTGTATGAGGTTTAATCCTCAATCACGAAGGAGAGTGCGCAACAATGACTGTTGTGTCCCCGAAGAAACATGGTGGCGCTGA
GCGCGTCGCCGATATCAGCCGCCGGCTGATGGAGAACCCGGAAACTGCCAGGCTGATCCAGGAGCTGGGTGAATCAACCGTCGACGCCAACGAGCTGGTG
CGTGGCTTGTTGCAGGCCACGATTAACAGTGGGCTCAACGCGGAAATGGATGCACACCTGGGCTACGTCAATGGCGACCGGGCTGGTAAGGAAGCGGCCG
GCCAAGCCAACAGCCGTAACGGCTCCTATCCTAAAACCGTGGACTCGGCATACGGGCCAGTTGATATCAGTGTCCCTCGAGATCGAGCAGGCACTTATAT
GCCGCGCATGGTCCCCAAGGGTAGCCGCAGACTTACCGACCTCGATGACATGATCATTAGTTTGTATGCGGGCGGAATGACCGTGCGTGACATCGAACAT
CATCTGGCTACCACCATCGGCGTGAACTTGTCGCCAGATACCATTAGCGCGGTCACCGATGCGGTCTTAGAGGAAGTCACCGCGTGGCAGACCAGGCAAC
TCGAGGCGTTCTATCCAGTTATCTTCCTTGATGCCCTACGTGTAAAAATCCGTGACAACGGACGCGTCGTCAACAAGGCGGTCTACATGGGTGTCGGAGT
GGACATGGAGGGCATTAAGCACATCTTGGGCTTGTGGGTAGCTACCAATGAAGGTGCAGCATTCTGGTCGCAGGTGTGCGCAGAAATCGCCAACCGCGGT
GTCAACGATGTCTTTATTGTCTGCTGTGACGGACTGAAAGGCTTTCCGGAAGCAATCCAGGCAACCTGGCCGGACTCCATGGTCCAAACCTGCGTGGTGC
ATCTGATTCGTGCCGCTAACAGGTGGGTAGCCTACGGCGACCGGAAAGAGGTCTCGAAGCATCTACGAGGCATCTATACCGCTGTCAACGAGGATGAAGC
TCGAAGTGCACTCGATGAGTTTGAGGCCAGCGAGCTTGGCCAGAAGTATCCGCAATCAGTGAAAGTCTGGCGCGACGCGTGGGACAGGTTCATTCCGTTC
CTGCAGTTCCCGCCAGCGGCAAGGAAGGTTATCTACACCACGAATTCCATCGAATCGATGAACAGTGAGCTGCGGAAAGCAACACGAAACCGCGTTCAGT
TCCCGTCGGATTCAGCGGCAGTGAAGACGCTGTGGCTGATGATCTGTAACATCGAGGACCGTCGTGCTGCCCGCCGCGCTAAAGAAGGTGCCAAGGCTTC
TGCTTCAGCCAAGCGACTTATCGAAGGCAGCAAGACCAGCAACTGGAAACAGGCAATCAATCAGCTATCCGTGGCCTACCCCGACAGGTTCGCCGCATAC
TTGTAAATCAGTCCCCGTACACAAACGGACTGACACCCTC
GCGCGTCGCCGATATCAGCCGCCGGCTGATGGAGAACCCGGAAACTGCCAGGCTGATCCAGGAGCTGGGTGAATCAACCGTCGACGCCAACGAGCTGGTG
CGTGGCTTGTTGCAGGCCACGATTAACAGTGGGCTCAACGCGGAAATGGATGCACACCTGGGCTACGTCAATGGCGACCGGGCTGGTAAGGAAGCGGCCG
GCCAAGCCAACAGCCGTAACGGCTCCTATCCTAAAACCGTGGACTCGGCATACGGGCCAGTTGATATCAGTGTCCCTCGAGATCGAGCAGGCACTTATAT
GCCGCGCATGGTCCCCAAGGGTAGCCGCAGACTTACCGACCTCGATGACATGATCATTAGTTTGTATGCGGGCGGAATGACCGTGCGTGACATCGAACAT
CATCTGGCTACCACCATCGGCGTGAACTTGTCGCCAGATACCATTAGCGCGGTCACCGATGCGGTCTTAGAGGAAGTCACCGCGTGGCAGACCAGGCAAC
TCGAGGCGTTCTATCCAGTTATCTTCCTTGATGCCCTACGTGTAAAAATCCGTGACAACGGACGCGTCGTCAACAAGGCGGTCTACATGGGTGTCGGAGT
GGACATGGAGGGCATTAAGCACATCTTGGGCTTGTGGGTAGCTACCAATGAAGGTGCAGCATTCTGGTCGCAGGTGTGCGCAGAAATCGCCAACCGCGGT
GTCAACGATGTCTTTATTGTCTGCTGTGACGGACTGAAAGGCTTTCCGGAAGCAATCCAGGCAACCTGGCCGGACTCCATGGTCCAAACCTGCGTGGTGC
ATCTGATTCGTGCCGCTAACAGGTGGGTAGCCTACGGCGACCGGAAAGAGGTCTCGAAGCATCTACGAGGCATCTATACCGCTGTCAACGAGGATGAAGC
TCGAAGTGCACTCGATGAGTTTGAGGCCAGCGAGCTTGGCCAGAAGTATCCGCAATCAGTGAAAGTCTGGCGCGACGCGTGGGACAGGTTCATTCCGTTC
CTGCAGTTCCCGCCAGCGGCAAGGAAGGTTATCTACACCACGAATTCCATCGAATCGATGAACAGTGAGCTGCGGAAAGCAACACGAAACCGCGTTCAGT
TCCCGTCGGATTCAGCGGCAGTGAAGACGCTGTGGCTGATGATCTGTAACATCGAGGACCGTCGTGCTGCCCGCCGCGCTAAAGAAGGTGCCAAGGCTTC
TGCTTCAGCCAAGCGACTTATCGAAGGCAGCAAGACCAGCAACTGGAAACAGGCAATCAATCAGCTATCCGTGGCCTACCCCGACAGGTTCGCCGCATAC
TTGTAAATCAGTCCCCGTACACAAACGGACTGACACCCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1344 bp | 447 aa | 63 | 1406 | + | No |
Description :
ORF sequence :
MTVVSPKKHGGAERVADISRRLMENPETARLIQELGESTVDANELVRGLLQATINSGLNAEMDAHLGYVNGDRAGKEAAGQANSRNGSYPKTVDSAYGPV
DISVPRDRAGTYMPRMVPKGSRRLTDLDDMIISLYAGGMTVRDIEHHLATTIGVNLSPDTISAVTDAVLEEVTAWQTRQLEAFYPVIFLDALRVKIRDNG
RVVNKAVYMGVGVDMEGIKHILGLWVATNEGAAFWSQVCAEIANRGVNDVFIVCCDGLKGFPEAIQATWPDSMVQTCVVHLIRAANRWVAYGDRKEVSKH
LRGIYTAVNEDEARSALDEFEASELGQKYPQSVKVWRDAWDRFIPFLQFPPAARKVIYTTNSIESMNSELRKATRNRVQFPSDSAAVKTLWLMICNIEDR
RAARRAKEGAKASASAKRLIEGSKTSNWKQAINQLSVAYPDRFAAYL
DISVPRDRAGTYMPRMVPKGSRRLTDLDDMIISLYAGGMTVRDIEHHLATTIGVNLSPDTISAVTDAVLEEVTAWQTRQLEAFYPVIFLDALRVKIRDNG
RVVNKAVYMGVGVDMEGIKHILGLWVATNEGAAFWSQVCAEIANRGVNDVFIVCCDGLKGFPEAIQATWPDSMVQTCVVHLIRAANRWVAYGDRKEVSKH
LRGIYTAVNEDEARSALDEFEASELGQKYPQSVKVWRDAWDRFIPFLQFPPAARKVIYTTNSIESMNSELRKATRNRVQFPSDSAAVKTLWLMICNIEDR
RAARRAKEGAKASASAKRLIEGSKTSNWKQAINQLSVAYPDRFAAYL
Blast result :
Comments
ISActu1 is 85% aa similar to IS1132.
References
1] Romain Guérillot and Philippe Glaser (2013) Direct submission.
2] Earl,A., Ward,D., Feldgarden,M., Gevers,D., Saerens,B., Vaneechoutte,M., Walker,B., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowen,C., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2012) Direct submission GenBank.
2] Earl,A., Ward,D., Feldgarden,M., Gevers,D., Saerens,B., Vaneechoutte,M., Walker,B., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowen,C., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2012) Direct submission GenBank.