ISNagr1

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003377 ND Natronobacterium gregoryi
Natronobacterium gregoryi SP2
DNA section
IS Length : 938 bp

Ends


IR Length : 14/16

IRL : GGCTCTGGTGAATCGCATGACTGCATAGACTTCGACCGTCAGAACTAGGG
IRR : GGCCGTGGTGAATCGCCATACGGCGCTTGATTTCGCTAGTTGACGGTACG

Insertion site


Left flankDirect repeatRight flankDR Length
GTGGGATATGCTTTGTGGGGGCGACCCC8
TGTCGTATAGGTAGAGAGTAACCCTTCT8
TGGACGCTCCCTCGATAGTGGTATCGAT8
TCCGACGACG GTCGCCTCAAGTAGTT CATCGCGAAG0
CTCGAGTTCG AAGTAGTTGTCGCCTC GTAACTCACT0

DNA sequence

GGCTCTGGTGAATCGCATGACTGCATAGACTTCGACCGTCAGAACTAGGGAGTTGAAGCGGGAAACGGCGGATGCTCTATGTCCAAAATTTCCCGCTTCA
CTGGGAAGGTCGTGACGTTGGCTAAAAGTGCTGTTGGTGGCCGAGGCGAATCCGCCGCCCCGCAGGGTGGCGGCGGATTCGCCGACTACGCCGTCGTTTC
GCTGCACTGTCTGCGGATTTACTTGGAGAAATCCTACCGGGAAGCACTTGACCTGTTGAGCGAGATGCCACAAATACTGGCGGAGATCGGCCTTGAGGAG
GCCGATCTCCCTGATCACTCTACGCTAGTGAAAGCATTTGATAGGATCAAGATGGCAGTCTGGCGAGTGCTGCTGCGCCTGTCGGCGCAGCTGCACGAGC
CATCTGGCCATGCGGCGATGGATGCGACGTTTTTCGACCGCGAAAACGCGAGCAAACACTACTGCCGACGGACGAATTACCGCGTTCAGACGCTCAAAAC
AACGGCTCTGGTCGATACTGAGTCACAAGCTATCCTCGACGTTCACTGCACAACCAAGAAACGTCACGACACGCAGATCGGCTGGCAACTCGCCCGCCGC
AACGCTGGCGAGTTGCACAGCCTCGCCGCCGACAAAGGCTACGACTGGCAACGGTTCCGTGATAAACTCCGGGAAGAGGACGTAAGACCGCTGATCAAGC
ATCGAGAGTTCCGTCCCATCGATCACGCGCATAACGCGCGGATCGATGGGACTCTCTACGGCCAGAGAGCGTTGTCTGAGACCGTCTTCTCGGTGATCAA
GCGCACGCTCGGCGACGCCGTGCGTGCGCGAAGCTGGTATCGTGAGTTCCGTGAAATCGTCCTAATGTGTGCCGTATACAACATCAAGCGTACCGTCAAC
TAGCGAAATCAAGCGCCGTATGGCGATTCACCACGGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
825 bp274 aa79903+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKISRFTGKVVTLAKSAVGGRGESAAPQGGGGFADYAVVSLHCLRIYLEKSYREALDLLSEMPQILAEIGLEEADLPDHSTLVKAFDRIKMAVWRVLLR
LSAQLHEPSGHAAMDATFFDRENASKHYCRRTNYRVQTLKTTALVDTESQAILDVHCTTKKRHDTQIGWQLARRNAGELHSLAADKGYDWQRFRDKLREE
DVRPLIKHREFRPIDHAHNARIDGTLYGQRALSETVFSVIKRTLGDAVRARSWYREFREIVLMCAVYNIKRTVN

 

Blast result :
Comments
ISNagr1 is 90% aa similar to ISHwa1.
There are probably a recombination event between the two insertion sites of the two copies without DR ( TCCGACGACGGTCGCCTC ( ) AAGTAGTTCATCGCGAAG and CTCGAGTTCGAAGTAGTT ( ) GTCGCCTCGTAACTCACT ).
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank