ISNma3

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001932 ND Natrialba magadii
Natrialba magadii ATCC 43099 plasmid pNMAG02
Natrialba magadii ATCC 43099
DNA section
IS Length : 1001 bp

Ends


IR Length : 21/25

IRL : CGCTCTTCTGTAGGAGATTGTTGATACTGCTCAGCTGTGGCTCGGAAATC
IRR : CGCTCTTGTGTAGCACTTTGTTGATCTCATAGTGTGGCTTTGATAGCGTG

Insertion site


Left flankDirect repeatRight flankDR Length
TTTACCATTATTGGCGGTTT0
TTCAGTTGTTTTGATTGAAT0
ATTCCATTTTTCTTCAATTG0
TCGTAGAACTTTACTGGAAATAGTGGGG8

DNA sequence

CGCTCTTCTGTAGGAGATTGTTGATACTGCTCAGCTGTGGCTCGGAAATCGAAGAGAGCAAGGACACCGCGTCAGCGGTGTCCGTTAGGCATGATTCCGC
TAGATGTGTTTGGGTCGGAATCGGTCGCAGCGGACCTGTTGGAGCAGGTTCGCTGGCGTAACGGTGTTACTTGCCCTCGCTGCCGTTCTGACCTAACGGT
CAAGAACGGCAGCTATGGGCACTTTCAGCGCTATCTCTGTAAGAATTGCGACCGCACGTTCAACGATAAGACTGGCACAATCTTCGCCCATTCGAAGATC
GCACTCGGAAAGTGGCTGTTCTCGATTTACGCGTTCCTCCGGTTCAACACAAGTCTGCGCCAACTTCAGCTAGAGATCGATGTTCAGTACAAAACGATCT
ACAAGCGCGTCGAGCGCTTCACGAAGGCGCTCGACGCGCCTTCGCTTGACCTCGTTGGTCCGATCGAAATTGACGAAGTCTACGTTTCTGCAGGGATGAA
AGGCCGCGAGCGCGACCGACCGTCGCGCTCGCGTGGCCTGTCCACACGTGGACGAGGATCGTACGAGCAGGACAAACCGCCGGTGTTCACGATCGTCGAT
CGTGGCACCGGCAATCGGTACGTGATCCCCGCGAAATCCGCCGACGAATCGACGGTTCGGCTCCTTCTTGCAAACCGCGAGAAGGAGCCACTGACTGTCT
ACACCGATGGATTTCGTGCCTACGATCCGTTAGCCGAGGACGACGCATTCGACCGCGAATACGTCGTCCACGGTGACGGCGAATACGCCGACGAAGACGT
TCACGTCAACACCTGCGAGAGCCACGGATCGCTGCTGCGACCGTGGCTCTCACCTCATCGAGGCATCTCAAAAGATAAGCTCACACAGTATCTCCGAGCG
TTCCAACTTCGACGAAAGTTACTGCGGAAACCAGGGAGAAAAGCGCTCAAACACGCTATCAAAGCCACACTATGAGATCAACAAAGTGCTACACAAGAGC
G
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa91975+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIPLDVFGSESVAADLLEQVRWRNGVTCPRCRSDLTVKNGSYGHFQRYLCKNCDRTFNDKTGTIFAHSKIALGKWLFSIYAFLRFNTSLRQLQLEIDVQY
KTIYKRVERFTKALDAPSLDLVGPIEIDEVYVSAGMKGRERDRPSRSRGLSTRGRGSYEQDKPPVFTIVDRGTGNRYVIPAKSADESTVRLLLANREKEP
LTVYTDGFRAYDPLAEDDAFDREYVVHGDGEYADEDVHVNTCESHGSLLRPWLSPHRGISKDKLTQYLRAFQLRRKLLRKPGRKALKHAIKATL

 

Blast result :
Comments
ISNma3 is 91% aa similar to ISHvo5.
References
1] Pfeiffer, F. (2013) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. (2012) BMC Genomics 13: 165