ISLcr1

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_014106 ND Lactobacillus crispatus
Lactobacillus crispatus ST1
DNA section
IS Length : 1597 bp

Ends


IR Length : 22/29

IRL : CTAAGTGTATAATTTTTTGCGGTAAGTTGAATAAATAATTAAAAAGCTCA
IRR : GTAAGTGTCAATATTTTTGCGGTAGGCTGTGAACCATTAGTCTAACCTTA

Insertion site


Left flankDirect repeatRight flankDR Length
AGTGAACTGTACGAGCTAGTTGATTAATG9
TTCATAACCTAACTGTTGCACTTAATTTG9
TTATTCCTGCAAAGTAATGCCTAATATTG9
ATTTTCCCTGTCAAAAAGGACATCTCTTC9
TTCACGAGTGCTAGTTTTTT0

DNA sequence

CTAAGTGTATAATTTTTTGCGGTAAGTTGAATAAATAATTAAAAAGCTCAAGTCATTTGAATTTGGACTTGAGCTAAAACAAAAAGACCAGTAGTCTGAT
GTTAAGAACAAAAACACATTAGAAGCTGGTCTTTTATGGAATCTATTATAACTGATATCGTGAAAATTATTAAGTCTGAAAATAATGTTATTGCTCGTGA
AAAGGCATTAATGTGCTATTTCTTTAATCTAATTAGAGAATTAATGAAACTAGCGCTAGAAGAAGTTGATGCTGGTTTAGTTGAGGAGACTAAAAAGCAA
GGCTATCAGATTGAAAAGAAAAATAAGCGTTCAGTTGTAACTGTCTTTGGAGAGATTAGCTATTGGCGCAGGAGATATATTTGTCCAGGCAAAAAGGCTA
AATACCCGCTGGATGAGCTGATGGGCTATGACAAGTATAAGCGTTATAGTGTTTTAGCAGTGAAGGATGTTTTACAGGTTAGTGCTGTGGCAACTTACCG
TAACACTGCTTTGGCAGTTAATACCCTTTCTTGTTTTAACATTAGTCATAGTCAAGTTGGCAAACTGATAGTTCAAGCAGGCAAACTGATTAAAAACCAA
AAACAGTCGGAAGAAAGATACGATGGCATTACCCAAAGGAAAAAGGTGCCAGTACTTTATCTTGAAGGCGATGGTGTTGTGATTAAGGGCACCAAGAAAC
GGCTAGAGTTTCATCGCTATCAAGTCTGTGAGGATATTATTAATTTAAGCCAAAAGCGCAGGAAGAGAGTTCAGGCCAAAGAGTTTGTTTCTTTAAGCCG
CTTGGATGCTTTGCAAGAAATTAAAACCTATTTAGCTAATACCTATGACTTAAGCGATACTTTAATCATCAGTAATGCCGATGGCGGTGCCGGTTATGCC
AAGAAAGATTTTGATGAAATAGTTGGTTATTGCCGGCAGCACGAACACTTCTTGGATGTCTTTCACTTGAATAAAAAAATTAAGGACCGTCTAAGCTTTA
TGCCAGCTATGCAAGGCAAATTGATCAGCGCAGTTGAGTTTAAATATGATCGTCACTTAACTGATGTAATTTTAGACACGATTGAAAGCAATCTGATTGA
TGAACTGAATACGCCAGAAAATCATGAAAACCTAAAGCTTCTGCGCAGCTATCTTCATCGTCGCTGGGCGGATATAAAACCATTCAAAATGCGTCATTTG
TCGGTAATTAAAGCAATTGGCTGCTGTGAAAGCAATCATCGCAAATATACCTATCGCGTCAAAGGGCAAGGAAAATACTGGTCAGAAGATGGTGCCGAAG
GAATCTTGCGTGTACTGACTTGTATTAAAAACAATGAACTGGAATACTGGCTTAGCAGTGAGTTCGCTGGTGGACAGCTGGATATTGGTGATCAGGAAGA
ATTGAAAGGTGCAGTTCGTACTAGTCTAAGAAAGATGCATGAAACCCATCTGGGCATTCATCATGGAATAATTGAAAGTTTAACGGCAGGTCATAGCTAT
TTGAATGATTTCGGTAGGGAAATAAATCAGATAAATATTTAAGAAATTAAGGTTAGACTAATGGTTCACAGCCTACCGCAAAAATATTGACACTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1407 bp468 aa1361542+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MESIITDIVKIIKSENNVIAREKALMCYFFNLIRELMKLALEEVDAGLVEETKKQGYQIEKKNKRSVVTVFGEISYWRRRYICPGKKAKYPLDELMGYDK
YKRYSVLAVKDVLQVSAVATYRNTALAVNTLSCFNISHSQVGKLIVQAGKLIKNQKQSEERYDGITQRKKVPVLYLEGDGVVIKGTKKRLEFHRYQVCED
IINLSQKRRKRVQAKEFVSLSRLDALQEIKTYLANTYDLSDTLIISNADGGAGYAKKDFDEIVGYCRQHEHFLDVFHLNKKIKDRLSFMPAMQGKLISAV
EFKYDRHLTDVILDTIESNLIDELNTPENHENLKLLRSYLHRRWADIKPFKMRHLSVIKAIGCCESNHRKYTYRVKGQGKYWSEDGAEGILRVLTCIKNN
ELEYWLSSEFAGGQLDIGDQEELKGAVRTSLRKMHETHLGIHHGIIESLTAGHSYLNDFGREINQINI

 

Blast result :
Comments
ISLcr1 is 95% aa similar to ISLhe10.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References
1] Romain Guérillot and Philippe Glaser (2012) Direct submission.
2] Brochet M, Da Cunha V, Couvé E, Rusniok C, Trieu-Cuot P, and Glaser P, P.(2009) Mol Microbiol. 71(4):948-59;
3] Guérillot R, Da Cunha V, Sauvage E, Bouchier C, Glaser P, (2013) Modular evolution of TnGBSs, a new family of ICEs associating IS transposition, plasmid replication and conjugation for their spreading (submitted);
4] Guérillot R, Glaser P, (2013) Diversity of bacterial prokaryotic mutator like transposase, association with conjugation conjugative elements and insertion specificity (on preparation).