ISNpe19

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003373 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624 plasmid pNATPE01
DNA section
IS Length : 1063 bp

Ends


IR Length : 15

IRL : GAGCGTGTCATAGAAAGAGTCACGTACGAAGCAGCAGGGTGCGCGAAGTG
IRR : GAGCGTGTCATAGAATCCATCTCATAGCTTCTCACAGCCCGGTTCGTTTC

Insertion site


Left flankDirect repeatRight flankDR Length
GTGGCTAGATCACGGTCTACAGTTAGGGGG10
TTCTGTTGAGTACCTAGAAGGATATCCGC9

DNA sequence

GAGCGTGTCATAGAAAGAGTCACGTACGAAGCAGCAGGGTGCGCGAAGTGTGTCCAACACAAGCGCAACCCTGCAAGACGTAGCTTCGGTAGACGACTTC
TTGAATGTCGCGGCTACCGAGACAGTACCGCTGTTCGAGCACCTTGAGTTCGAGTTTCTGCTGGAGTATGACGTGTTCGCCCCCTCGAAGCGGGGGCGAA
CACGAGTTCACCAGCCACCAGACCTCTTTCGTGGCTTTCTACACTGCTACTACAAGGACATCTACGGCACACGACCGGTTGCACGAGAACTCCAACACGG
CCTCGTCTGGTACTACTGCAGACTCGACAAACCACCATCCAGGGACACGATTGACCGGTTTCTTACCGACCTCGAACACGTCATCGACGATGTCTTCGAG
AGACTCGTCGAGCAGGCTGCCGCCCGCAGCCTGCTCGACTCAACGTACTCCATCGATTCAACGCACATCGAGGCGATCCAGTACAACGATGCTGCCTCGT
GGAACTACGATCCAACGGCCGAAGAGTACTACTACGGCTTCGGCTGTACGATCGTCTCAACCGGCGCAAAGATCCCGATCGCAGCGGAGTTCACACAGGC
CAAACAAGCAGACCAAGAGACGGCGATGCGCGTCACCCGTGACGCGCTCGCCGTCGATACACCGATCTGGATGCTTGGAGACAGCGCCTACGACATTCTC
GATTGGCACGACTACCTGCTGGCCGCAGGAGTCGTGCCAATCGCTCCATACAATCCGCGAAACACTGACGACCCGAAAGACATCGAGTACAGGGTCGAAG
ACCGAATCGAGAAACACAGCGAGGACGTTCAGCTGAAACAATCCATCTTGGACGAGACGTACAACAGCCGGACAGGAGTCGAGCGAACCAATGACGCAGT
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTCCATGCACGAACAGAAGTGTTCCTTGCACTGTGTCTCCGGCTCGTCGTTGCAATCACC
AACTACGAGCGAGGAAACGAACCGGGCTGTGAGAAGCTATGAGATGGATTCTATGACACGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
993 bp330 aa501042+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSNTSATLQDVASVDDFLNVAATETVPLFEHLEFEFLLEYDVFAPSKRGRTRVHQPPDLFRGFLHCYYKDIYGTRPVARELQHGLVWYYCRLDKPPSRDT
IDRFLTDLEHVIDDVFERLVEQAAARSLLDSTYSIDSTHIEAIQYNDAASWNYDPTAEEYYYGFGCTIVSTGAKIPIAAEFTQAKQADQETAMRVTRDAL
AVDTPIWMLGDSAYDILDWHDYLLAAGVVPIAPYNPRNTDDPKDIEYRVEDRIEKHSEDVQLKQSILDETYNSRTGVERTNDAVKDCGLGHVRARGRVHA
RTEVFLALCLRLVVAITNYERGNEPGCEKL

 

Blast result :
Comments
The transposase is Natpe_4044 (which represents only the C-terminal region (due to transposon targetting), and is encoded on plasmid pNATPE01.
In the genome, the sequence is targetted by ISH8 element.

ISNpe19 is 96% aa similar to ISNpe2.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank