ISAba26
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP007712 | ND | Acinetobacter baumannii | Acinetobacter baumannii MDR-ZJ06 Acinetobacter baumannii LAC-4 Acinetobacter baumannii AB0057 Acinetobacter baumannii AB031 Acinetobacter baumannii AC29 Acinetobacter baumannii AC30 Acinetobacter baumannii AC12 Acinetobacter baumannii PKAB07 Acinetobacter baumannii BJAB07104 Acinetobacter baumannii TYTH-1 Acinetobacter baumannii MDR-TJ |
DNA section
IS Length : 1318 bp
Ends
IR Length : 19/26
IRL : GGGACTGTTCTAAATTTTGTGTAAGTACTTAATTTTCATTTATCCTTCAG
IRR : GAGCCTGTAAATTATTTTGTGTAAGTTCCATTTTTTATAAATGATCTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGAAAAAAT | AACAAATG | AAAAAGGCCT | 8 |
CAGTTGGGCT | AGCTGGTA | TGAAAATTTC | 8 |
ATCGGTTTTA | TGAATGAA | AAATTTATTC | 8 |
DNA sequence
GGGACTGTTCTAAATTTTGTGTAAGTACTTAATTTTCATTTATCCTTCAGAGGATAATTACAAAAGGTACTTCACATGGATGAAGCAACAATCAAAAGTA
TGGCTGCCGAATTGGCTAAAGGTCTAAAAACACCAGAAGACTTAAACCAAATGACAGCAGTCTTTAAAAAATTCATGATTGAAACTGCACTCAATACTGA
ACTTTCAGACCATCTCGGTTATGAAAAGCATCAGCCCAAGAAAGGCTCAAATAGCCGTAATGGGTTTAGTTCTAAAACCATTACAACTCAAGATGGACAA
CTGGCTTTAGATATTCCCCGTGATCGAGAAGGTTCATTTGAGCCACAAATTATCAAAAAGCACCAAACACGCATCACCAGTATGGATGACCAAATCCTCT
CACTGTATGCAAAAGGAATGACTAATAGGGAAATTGTAGCCTTCTTCAAAGAAATGTACGATGCCGATGTGTCAGCATCTCTCATCAGCAAAGTTACCGA
TGCTGTGATTGAGCAAGTGACTGAGTGGCAAAATAGAGCCTTAGATAGCCTTTATCCTGTTGTCTATCTTGACTGTATTGTTGTCAAAGTCCGTCAGCAC
TCCAATGTGATTAACAAGTCCGTATACCTTGCTTTAGGCATCAATATGGATGGGCAAAAAGAATTACTGGGTATGTGGATTGCTCAGACAGAAGGTGCCA
AATTCTGGCTGTCAGTCATGACAGAGCTAAAAAATCGAGGAGTACAGGACATTCTTGTTGCCTGTGTAGATGGATTAAAAGGCTTTCCTGACGCGATAGC
CTCTGTTTACCCTCATACTGATATTCAACTGTGTATTGTGCATGTTGTACGCAATAGCCTGAGATTTGTAAGCTGGAAAGACTACAAGGCTGTTACGTCG
GGTCTGAAAGCGATTTATCAGGCAAGTACAGAGGAAAATGCTTTAAAGTCCCTAGACATCTTCTGTGATCAATGGAATCACCAGTATCCCAAAATTGGAG
AATCCTGGCGGGCCAATTGGGAAAATATCCGAACGATCTTTAGCTATCCAGCCGAAATACGTCATGCTATTTATACAACAAATGCGATTGAGTCGTTGAA
TAGCGTAATACGCCATTCAACGAAGAAAAGGAAAATCTTTTCATCTGATGACTCAGTAAAGAAGGTCATTTACTTAGCAACATCAAATGCTGCGAAGAAA
TGGACGATGCCAATTCAAAATTGGCGTTTAGCAATGAATTGGTTTACGATTCAGTTCGATGATCGATTAAAAGATCATTTATAAAAAATGGAACTTACAC
AAAATAATTTACAGGCTC
TGGCTGCCGAATTGGCTAAAGGTCTAAAAACACCAGAAGACTTAAACCAAATGACAGCAGTCTTTAAAAAATTCATGATTGAAACTGCACTCAATACTGA
ACTTTCAGACCATCTCGGTTATGAAAAGCATCAGCCCAAGAAAGGCTCAAATAGCCGTAATGGGTTTAGTTCTAAAACCATTACAACTCAAGATGGACAA
CTGGCTTTAGATATTCCCCGTGATCGAGAAGGTTCATTTGAGCCACAAATTATCAAAAAGCACCAAACACGCATCACCAGTATGGATGACCAAATCCTCT
CACTGTATGCAAAAGGAATGACTAATAGGGAAATTGTAGCCTTCTTCAAAGAAATGTACGATGCCGATGTGTCAGCATCTCTCATCAGCAAAGTTACCGA
TGCTGTGATTGAGCAAGTGACTGAGTGGCAAAATAGAGCCTTAGATAGCCTTTATCCTGTTGTCTATCTTGACTGTATTGTTGTCAAAGTCCGTCAGCAC
TCCAATGTGATTAACAAGTCCGTATACCTTGCTTTAGGCATCAATATGGATGGGCAAAAAGAATTACTGGGTATGTGGATTGCTCAGACAGAAGGTGCCA
AATTCTGGCTGTCAGTCATGACAGAGCTAAAAAATCGAGGAGTACAGGACATTCTTGTTGCCTGTGTAGATGGATTAAAAGGCTTTCCTGACGCGATAGC
CTCTGTTTACCCTCATACTGATATTCAACTGTGTATTGTGCATGTTGTACGCAATAGCCTGAGATTTGTAAGCTGGAAAGACTACAAGGCTGTTACGTCG
GGTCTGAAAGCGATTTATCAGGCAAGTACAGAGGAAAATGCTTTAAAGTCCCTAGACATCTTCTGTGATCAATGGAATCACCAGTATCCCAAAATTGGAG
AATCCTGGCGGGCCAATTGGGAAAATATCCGAACGATCTTTAGCTATCCAGCCGAAATACGTCATGCTATTTATACAACAAATGCGATTGAGTCGTTGAA
TAGCGTAATACGCCATTCAACGAAGAAAAGGAAAATCTTTTCATCTGATGACTCAGTAAAGAAGGTCATTTACTTAGCAACATCAAATGCTGCGAAGAAA
TGGACGATGCCAATTCAAAATTGGCGTTTAGCAATGAATTGGTTTACGATTCAGTTCGATGATCGATTAAAAGATCATTTATAAAAAATGGAACTTACAC
AAAATAATTTACAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1209 bp | 402 aa | 76 | 1284 | + | No |
Chemistry : DDE
ORF sequence :
MDEATIKSMAAELAKGLKTPEDLNQMTAVFKKFMIETALNTELSDHLGYEKHQPKKGSNSRNGFSSKTITTQDGQLALDIPRDREGSFEPQIIKKHQTRI
TSMDDQILSLYAKGMTNREIVAFFKEMYDADVSASLISKVTDAVIEQVTEWQNRALDSLYPVVYLDCIVVKVRQHSNVINKSVYLALGINMDGQKELLGM
WIAQTEGAKFWLSVMTELKNRGVQDILVACVDGLKGFPDAIASVYPHTDIQLCIVHVVRNSLRFVSWKDYKAVTSGLKAIYQASTEENALKSLDIFCDQW
NHQYPKIGESWRANWENIRTIFSYPAEIRHAIYTTNAIESLNSVIRHSTKKRKIFSSDDSVKKVIYLATSNAAKKWTMPIQNWRLAMNWFTIQFDDRLKD
HL
TSMDDQILSLYAKGMTNREIVAFFKEMYDADVSASLISKVTDAVIEQVTEWQNRALDSLYPVVYLDCIVVKVRQHSNVINKSVYLALGINMDGQKELLGM
WIAQTEGAKFWLSVMTELKNRGVQDILVACVDGLKGFPDAIASVYPHTDIQLCIVHVVRNSLRFVSWKDYKAVTSGLKAIYQASTEENALKSLDIFCDQW
NHQYPKIGESWRANWENIRTIFSYPAEIRHAIYTTNAIESLNSVIRHSTKKRKIFSSDDSVKKVIYLATSNAAKKWTMPIQNWRLAMNWFTIQFDDRLKD
HL
Blast result :
Comments
ISAba26 is 85% aa similar to ISEc39.
References
1] Ou HY, Kuang SN, He X, Molgora BM, Ewing PJ, Deng Z, Osby M, Chen W, Xu HH (2015) Sci Rep. 2015 Mar 2;5:8643