ISNamo23

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 1557 bp

Ends


Left end : CTTAATTCAAGCAGGGAATCCCGGCCTTTAAGCCGGGAGGGAATGCGACACGGTGCTGACTGACCGCTACTCGGTGGCTCGGTCGGAATCCAACTCCCGT II struct. : Yes
Right end : AACCGGACAGATGACGCTCTCGGCGTTTTCGGACTGAAACCTGCCTACCGGATTCTCACCGTGTGGGAAGCCCCGCCGTTCACGGCGGGGAGGATGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TTTTAATCCGACCCATAAAACGTGACTCTCAC
CATAAAGAACAGCCATGCCCGGTGGTTTTCAC

DNA sequence

CTTAATTCAAGCAGGGAATCCCGGCCTTTAAGCCGGGAGGGAATGCGACACGGTGCTGACTGACCGCTACTCGGTGGCTCGGTCGGAATCCAACTCCCGT
TGCGCGTGGAGTAGCATCCCTCGCCACGTCAGCCCGTGGTGCTTCTTCGTTTCTTTCAGGCTCTCGTACTGTTCTTCGCCTACCTCGATGTTGATGTTCT
TCACGTCTCATGGTTTGTGACCGACGGTGTTAATTGTGACTAACACTATTGTAGCACTGTGTCCGAGACGGTGACGAAGACGCTACAGGCCACGCTCGCA
ACGCCCACCACGGGCAAAGAGCAACGCTTACAACGACTCTTGGACACCTACCGCGAAGCACTCCACGACGCCTTCGACAACAGGGCCGACACAATGTCTG
CCGTCAACGACGTTGTGACGCCCTACGACCTGCCGTACCAAGCCAAAGACGCGCTCAAATCCTACGTCCCGAAACTCCGCTCGACGTACAACGCCGAAGA
GTTGGACGACGAGCATCCGCTTCGACTCGTCAACCGGGCCGCGACGTTCGACTACTCCGACGAGCGCGAACACGGTTTCGTGTGGCAGGCCCCGCAACCC
GGACGCGGGACGAACTTCTGGATTCCGCTTCGGATCAACCCCGAGCAGGAATCTCTGTGGTTCGACCTGCTCTCCGAGGACGCGAAGGCGGGCGAACTAC
GGCTACAGCGACACCGCACGTCGTGGGAGTTGCACGTCACCGTCGAATACCCGGTCGAAGAACCGACCGACTCGGACGACGAGACATACATCGGTTTCGA
CGTCGGTGAGAGCGCGTTGATCACGGGCTGTGCCCTCAAACGCGACGCACCACGGAAGCCGATGCTCGTCAGCGGCAGTCGAGCGCGACACCTCCGCAAA
GAAATGCACACCACACTGCAACGGCTTCAAGAGCGCGATGCTTCGGAGTGGCGGATCGACGAGCGATTCGACCACTACCAGAACGCGCTCACAGATATCG
TCGAGAAAGCGTCTCGGCAGGCCGTCGAGTACGCCGAGTCCTTCGAGAATCCCGTTATCGTTCTCGAAGACCTGTCGTACATCCGCGAATCGCTGGATTA
CGGCAAATTCATGAATCGGCGTTTGCACTCATGGGCGTTTGCCCGGCTACAGGGCCGAATCGAAGACAAAGCGGCCGAGGCAGGGATTCGCGTCGAGTAC
GTCAACGCGGCGTACACCTCGCAGACGTGCCACGCCTGCGGTCGTCTCGGCCGGCGGAGTCAGCAAGCGGAGTTTGTGTGTCCGCACGAGGACTGCCACG
TATCGGAGTTCCAAGCAGACATCAACGCGGCGGCGAACATCGCCGGTCGCGCTAACCCGTGGGGAGAAAGCGTCCGTTGGGAACCCGGACGCGATGACTC
GCCTCGGGATAGGAGCGCCTGTGACAGCGCCACAGTTCACCGAGAGACGAGTCCGAGAACCGGACAGATGACGCTCTCGGCGTTTTCGGACTGAAACCTG
CCTACCGGATTCTCACCGTGTGGGAAGCCCCGCCGTTCACGGCGGGGAGGATGTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
138 bp45 aa20467-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MKNINIEVGEEQYESLKETKKHHGLTWRGMLLHAQRELDSDRATE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1236 bp411 aa2591494+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSETVTKTLQATLATPTTGKEQRLQRLLDTYREALHDAFDNRADTMSAVNDVVTPYDLPYQAKDALKSYVPKLRSTYNAEELDDEHPLRLVNRAATFDYS
DEREHGFVWQAPQPGRGTNFWIPLRINPEQESLWFDLLSEDAKAGELRLQRHRTSWELHVTVEYPVEEPTDSDDETYIGFDVGESALITGCALKRDAPRK
PMLVSGSRARHLRKEMHTTLQRLQERDASEWRIDERFDHYQNALTDIVEKASRQAVEYAESFENPVIVLEDLSYIRESLDYGKFMNRRLHSWAFARLQGR
IEDKAAEAGIRVEYVNAAYTSQTCHACGRLGRRSQQAEFVCPHEDCHVSEFQADINAAANIAGRANPWGESVRWEPGRDDSPRDRSACDSATVHRETSPR
TGQMTLSAFSD

 

Blast result :
Comments
ISNamo23 is 95% (TnpB) aa similar to ISHhu6. The first ORF is a passenger gene annotated as uncharacterized protein.
References
1] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. Genome Announc. (2013) 1: e0009513