ISAjo2
- Family IS1202
- Group ISAba32
Isoform Synonym(s) ISAba71
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Acinetobacter johnsonii | Acinetobacter baumannii Acinetobacter johnsonii Acinetobacter baumannii S30 plasmid pS30-1 |
DNA section
IS Length : 1482 bp
Ends
IR Length : 20/24
IRL : TGTAACTCCAAAATAGAAATGTCCGGTTTCTCCAAAGTAAAAATGTCCGC
IRR : TGTTATTCCTAAGTAGAAATGTCCTACCTAATAACCAAATAGAAATGTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATACGAATC | TAAAAA | TGGGAGCCTT | 6 |
GAAACGAGAG | AAAAATGGGA | 0 | |
TATACGAAAC | GAGAG | AGTGTTAGAA | 5 |
TATACGAAGT | ACACT | TGTATATTAA | 5 |
GCAATACACT | AATCTTGTTA | 0 | |
GAAGTAACCT | GCATATAAAA | 0 | |
TATGCGAAAT | TTGCCT | GAATAGCCTT | 6 |
DNA sequence
TGTAACTCCAAAATAGAAATGTCCGGTTTCTCCAAAGTAAAAATGTCCGCTTTTAGAATATGCACTTTTGCAATTTTCTTAGCGGACGGTTTGATATGTT
GGTGTCTATGTCGGATAAAGAACTTAAACGATTGTCGGTCTTGCAAGAAATCTGTGATCAACGCATAACCCAGTCCCAAGCTGCTCAGCTACTTCATATT
TCAGAACGTCAGATCAGACGTTTATTGCAAAAATACAAAGCTCAAGGCCCAGCTGCATTAGCACATGCTGCACGTGGCCAAATCAGCAATTCCAGGCTTC
CTGAAGAGCTCAGACTCAAGTGCCTCAATATTGTTTCGGATCAACTGCATGGTTTCGGACCCACTTTAGCGCATGAAAAGCTCACCACTGTTCATGGATT
CGATATTTCAGTGGAAACACTGCGTTCCTGGATGATTGCAGCCGATCTGTGGATTCCTCGCGCCAAGCGCCTGAAACGCCCGTATCAGCCTCGTTATAAC
CGAGATTGTTATGGTGAACTGATTCAAATCGATGGCTCACACCATGACTGGTTTGAAGGACGCGCTGCTAAGTGCTGTCTGCTGGTATTTATCGATGATG
CCACAGGAAAATTACAGCATTTACGTTTCTGTGAGTCGGAATCAGCATTTGACTATATGATTTCAACACGTTTGTATGTTGAGCAGCATGGTAAGCCGTT
GGCGTTTTACAGTGATAAACATTCAGTCTTCAGGGTGAATCAAAGCAGCAAGAAAGACACCAAGATTACCCAGTTTGGACGCGTACTCAGTACCCTGAAT
ATCGATATCATCTTCGCCAATTCACCACAGGCCAAAGGCCGTGTGGAACGTGCCAACAGAACCCTTCAGGACCGTCTGATCAAGGAGATGCGTCTGGAAG
GTATCAGCTCGATTGAGCAAGCTAATGCCTGGCTACCCTGCTTCATTGAGCAGTTCAATCAGAAGTTCGCCAAGATGGCTTTTAATCCTAAGGATCTACA
TCGGCCTATCACTGAAACAGCCGAAGAATTAGATGATGTTTTTACCTGGCGTGAACCCCGCAGAGTCACGAACAGCCTGACGATTACTTATGATAAATGC
GTATATTTACTGGAAAATACCGAAGAAAATAAAAGGTTGATCGGCAAGTATCTTGAGTTTCTGGAATACCCGGATGGCACGGTAGCCATTGAACATCAAG
GAAGAAAAATCAATTACAGCATCTTCGATAAATTAAGTCAGCTCAACCAGCGAGAGGTTGTTGAGAATAAACGTTTAGGTGCTGTTCTCAATCATATTCA
ACAACAGCACGAAGAATTAGAACAGCAAAACAAACGCAATCGTTCTCAAAAGATGCCAAGCAGACGTGCACAGAAAATAGCAATCAAAGAACGAAATCTA
AATCCTGTGCTTGACTTGGAATTGTCCATATAGGACATTTCTATTTGGTTATTAGGTAGGACATTTCTACTTAGGAATAACA
GGTGTCTATGTCGGATAAAGAACTTAAACGATTGTCGGTCTTGCAAGAAATCTGTGATCAACGCATAACCCAGTCCCAAGCTGCTCAGCTACTTCATATT
TCAGAACGTCAGATCAGACGTTTATTGCAAAAATACAAAGCTCAAGGCCCAGCTGCATTAGCACATGCTGCACGTGGCCAAATCAGCAATTCCAGGCTTC
CTGAAGAGCTCAGACTCAAGTGCCTCAATATTGTTTCGGATCAACTGCATGGTTTCGGACCCACTTTAGCGCATGAAAAGCTCACCACTGTTCATGGATT
CGATATTTCAGTGGAAACACTGCGTTCCTGGATGATTGCAGCCGATCTGTGGATTCCTCGCGCCAAGCGCCTGAAACGCCCGTATCAGCCTCGTTATAAC
CGAGATTGTTATGGTGAACTGATTCAAATCGATGGCTCACACCATGACTGGTTTGAAGGACGCGCTGCTAAGTGCTGTCTGCTGGTATTTATCGATGATG
CCACAGGAAAATTACAGCATTTACGTTTCTGTGAGTCGGAATCAGCATTTGACTATATGATTTCAACACGTTTGTATGTTGAGCAGCATGGTAAGCCGTT
GGCGTTTTACAGTGATAAACATTCAGTCTTCAGGGTGAATCAAAGCAGCAAGAAAGACACCAAGATTACCCAGTTTGGACGCGTACTCAGTACCCTGAAT
ATCGATATCATCTTCGCCAATTCACCACAGGCCAAAGGCCGTGTGGAACGTGCCAACAGAACCCTTCAGGACCGTCTGATCAAGGAGATGCGTCTGGAAG
GTATCAGCTCGATTGAGCAAGCTAATGCCTGGCTACCCTGCTTCATTGAGCAGTTCAATCAGAAGTTCGCCAAGATGGCTTTTAATCCTAAGGATCTACA
TCGGCCTATCACTGAAACAGCCGAAGAATTAGATGATGTTTTTACCTGGCGTGAACCCCGCAGAGTCACGAACAGCCTGACGATTACTTATGATAAATGC
GTATATTTACTGGAAAATACCGAAGAAAATAAAAGGTTGATCGGCAAGTATCTTGAGTTTCTGGAATACCCGGATGGCACGGTAGCCATTGAACATCAAG
GAAGAAAAATCAATTACAGCATCTTCGATAAATTAAGTCAGCTCAACCAGCGAGAGGTTGTTGAGAATAAACGTTTAGGTGCTGTTCTCAATCATATTCA
ACAACAGCACGAAGAATTAGAACAGCAAAACAAACGCAATCGTTCTCAAAAGATGCCAAGCAGACGTGCACAGAAAATAGCAATCAAAGAACGAAATCTA
AATCCTGTGCTTGACTTGGAATTGTCCATATAGGACATTTCTATTTGGTTATTAGGTAGGACATTTCTACTTAGGAATAACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1326 bp | 441 aa | 108 | 1433 | + | No |
Chemistry : DDE
ORF sequence :
MSDKELKRLSVLQEICDQRITQSQAAQLLHISERQIRRLLQKYKAQGPAALAHAARGQISNSRLPEELRLKCLNIVSDQLHGFGPTLAHEKLTTVHGFDI
SVETLRSWMIAADLWIPRAKRLKRPYQPRYNRDCYGELIQIDGSHHDWFEGRAAKCCLLVFIDDATGKLQHLRFCESESAFDYMISTRLYVEQHGKPLAF
YSDKHSVFRVNQSSKKDTKITQFGRVLSTLNIDIIFANSPQAKGRVERANRTLQDRLIKEMRLEGISSIEQANAWLPCFIEQFNQKFAKMAFNPKDLHRP
ITETAEELDDVFTWREPRRVTNSLTITYDKCVYLLENTEENKRLIGKYLEFLEYPDGTVAIEHQGRKINYSIFDKLSQLNQREVVENKRLGAVLNHIQQQ
HEELEQQNKRNRSQKMPSRRAQKIAIKERNLNPVLDLELSI
SVETLRSWMIAADLWIPRAKRLKRPYQPRYNRDCYGELIQIDGSHHDWFEGRAAKCCLLVFIDDATGKLQHLRFCESESAFDYMISTRLYVEQHGKPLAF
YSDKHSVFRVNQSSKKDTKITQFGRVLSTLNIDIIFANSPQAKGRVERANRTLQDRLIKEMRLEGISSIEQANAWLPCFIEQFNQKFAKMAFNPKDLHRP
ITETAEELDDVFTWREPRRVTNSLTITYDKCVYLLENTEENKRLIGKYLEFLEYPDGTVAIEHQGRKINYSIFDKLSQLNQREVVENKRLGAVLNHIQQQ
HEELEQQNKRNRSQKMPSRRAQKIAIKERNLNPVLDLELSI
Blast result :
Comments
ISAjo2 is 64% aa similar to ISMex6.
References
1] Zhiyong ZONG (2015) Direct submission to ISfinder
2] Blackwell G. (2016) Direct submission to ISfinder
2] Blackwell G. (2016) Direct submission to ISfinder