ISNhu1

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOIM01000041 ND Natrialba hulunbeirensis
Natrialba hulunbeirensis JCM 10989
DNA section
IS Length : 1902 bp

Ends


Left end : ACGAAAAGCAGCGCGAGTTCCCCGCCCTTCCGAAAACCGCAGGTTTTCGGCTTTCGCAAATCTTTGATTTGCGTCAACACCGTGGGCGGGGGTGAAGCGC II struct. : No
Right end : GCCGCCCAACCTCATCCCGTTTCCTCGCGGAACAGGGAGTGCTAGCGCACGGCTGAGGGAACTACAAAAGCCTCGGGCCACCGCGCCCGAGGTTGTTTAC II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGGCCTGTCTGTTCTAAAAGAGTCGCTGT

DNA sequence

ACGAAAAGCAGCGCGAGTTCCCCGCCCTTCCGAAAACCGCAGGTTTTCGGCTTTCGCAAATCTTTGATTTGCGTCAACACCGTGGGCGGGGGTGAAGCGC
GTCACTTCGGCACGTGTTCCGTCTCTTCGATATACCGTTCAACCACTTCCTCCGACACCGCACCTGTCGTTCCCACATAGTACCCAACCTTCCAAAATCC
GCCACCCCAGAAATACGACTCCTGAATCTCGGGATACCGCTCCAGCAAGTGCTTACCCGAGTACGACTTGAACTGCCGGGCGAGGTCGGCTGGACTGTGT
TTTGGGTCGCACTGGACGAACAGGTGTACGTGGTCGTCTGCAATCTCCAACGCCAGAATTTTGTGCCCGAAGTGGTCGGAAGTCTCATCAAACAACTCTC
GTACATCGTCTTCAACCACGTTGAGAACCGGGTGTCGGTACTTGGGACACCAGACAAAATGATATTTACAGGAACTAACCGAATGTGCGTGACTGCGGTA
CTCTTCCATCCCTAATCCCTACATTTATGATAATCTGGAACGATTGTCAATGCATGGGTGAAGAAGCCACGAAGACGATCCAGACGCGGCTCCACATAGC
GTCTGGTGAACGATCGTGGCTTCACGACGCCCGCCTCGCCTCACGCGAGATCTTCAACCAAACCATCCGCCTCAAACAACAAGGGGACAATCGCACCGAG
ATACAGAAGGAGGTTGACCGCGACGACTTCCTACGGAACAACAAGTGCGCGGTCGTCGGCAAAGCCCTCCAAACATGGGACTCCTACCAATCACTCAAAG
ACTGGTGGGAGAATCAAGACGACCCCGACCGAGGGAAGCCGACGCCGCCGAGTACGGACAAATCTAGTGCCTACCCGCTTGTGATGGCGCACACGGAAGG
CTACCGCCTCACCGTGAACGACAACACGAACCGCGTCCAGTTCCGCATCAGCCCGAAACCCTACAAGAAGGTGAAGGGCCATCTTCGCGGTGAGCCGGAC
GCAATGGACGAACTTCGAGACGCCCTCACGTCGAATGAGGTGGATATAGGACAGGCCGAACTCCTGTACCGCGATGGCGTGTACTACCTACACGTCACGG
TTACACGCGAGTTCGACGTACCCGAACCCGACACCGCCGATACTGTGATCGGCGTGGACATCAACGAGCGCAACGTCGCACTCACCGCCCTTGACCGCGA
GACGATGCAGACGAAAGGTACACTCGTCCTCGATTACGGACGAGTCAAGCAGGAACGCCAACGCTACCACACTATCACCACTCGCTGTCAAGAACACGGC
AAAACGAGCATCCACCATAGACTCGGTGACAAGGAGGAGCGGTTCACCGAGTGGGTGTTGCATCGACTTTCCCGTGCTGTCGTGGAGTTCGCAGAGCAGT
TCTCGAATCCGGTTATCGTGTTCGAGGATATGAGCGGCATCCGCGACGAAATCAAGTACGGGGCGTATATGAACCGCCGATTGCACAAACTGCCGTTTCA
CAAGTTCGAGACGTTCGTCTCGTACAAGGCGACATGGCGGGAGGTTCCTACGGACACGGTTGATGCCTACTACAACTCGAAGACGTGTTCGTGCTGTGGT
GAGCGTGGGTATCGGCAAGGACGGCGGTTCCGCTGTACGAACGACAAGTGTAATCTGGCGCAAGATCACGCTGACCGGAATGCGTCGGTGAACATCGCGT
GGCGCGAGAAGACGAAGCTCGACGGTAATACGACGAATTACCGGACTCACAAAACCCAACCGCAGGTGCGGGTGGTGCGTCTGTCCGGGTCGGGGCGCGT
AAGCCGCCCAACCTCATCCCGTTTCCTCGCGGAACAGGGAGTGCTAGCGCACGGCTGAGGGAACTACAAAAGCCTCGGGCCACCGCGCCCGAGGTTGTTT
AC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
408 bp135 aa509102-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MEEYRSHAHSVSSCKYHFVWCPKYRHPVLNVVEDDVRELFDETSDHFGHKILALEIADDHVHLFVQCDPKHSPADLARQFKSYSGKHLLERYPEIQESYF
WGGGFWKVGYYVGTTGAVSEEVVERYIEETEHVPK

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1305 bp434 aa5541858+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MGEEATKTIQTRLHIASGERSWLHDARLASREIFNQTIRLKQQGDNRTEIQKEVDRDDFLRNNKCAVVGKALQTWDSYQSLKDWWENQDDPDRGKPTPPS
TDKSSAYPLVMAHTEGYRLTVNDNTNRVQFRISPKPYKKVKGHLRGEPDAMDELRDALTSNEVDIGQAELLYRDGVYYLHVTVTREFDVPEPDTADTVIG
VDINERNVALTALDRETMQTKGTLVLDYGRVKQERQRYHTITTRCQEHGKTSIHHRLGDKEERFTEWVLHRLSRAVVEFAEQFSNPVIVFEDMSGIRDEI
KYGAYMNRRLHKLPFHKFETFVSYKATWREVPTDTVDAYYNSKTCSCCGERGYRQGRRFRCTNDKCNLAQDHADRNASVNIAWREKTKLDGNTTNYRTHK
TQPQVRVVRLSGSGRVSRPTSSRFLAEQGVLAHG

 

Blast result :
Comments
ISNhu1 is 98% (TnpA : the transposase) aa similar to ISH34 and 97% (TnpB) aa similar to ISNph6.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.