ISAba32
- Family IS1202
- Group ISAba32
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Acinetobacter baumannii | Acinetobacter baumannii isolate D36 |
DNA section
IS Length : 1482 bp
Ends
IR Length : 20/26
IRL : TGTTAGAACCCATTTAAAGTGTCTATATTCTCACCAATAAAAATGTCTGG
IRR : TGTTATTCACCAATTAAAATGTCTATGCGAAAAACCATTTAAAATGTCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAATATATA | AGTGT | ACTTCGTATA | 5 |
DNA sequence
TGTTAGAACCCATTTAAAGTGTCTATATTCTCACCAATAAAAATGTCTGGTTTATGATGGTTTTTATCACCATGGACTGGATATAAAATATAGATGCTGA
TCACTATGTCTGACAAAGAAATTCAACGTCTTGCAGTTCTGCAAGACGTTCGAGATCATCGTATTACCCAAGTCCGTGCTGCTGAAATCCTGAATCTTTC
CACCCGTCAAATTACCCGGTTATTGCAGAAGCTCAATCAAGATGGTGTTTCAGGCATGACGCATGCCAGTCGTGGTCAACCTGGCCATCGTCGCCATGAT
GACTTGTTAAAATCAAAGTGCCTTTCCATTATTGCTGAACATTTGCTGGGCTTTGGACCCACCTTGGCGCATGAGAAGCTCAGCAGCATGTTTGGTCTGC
ATATCCCTGTAGAAACGGTTCGTCGCTGGATGACTGCAAATGACCTGTGGATTCCTCGATCCAAGCGTCTGAAACGTCCGTATCAGCCTAGATATAACCG
TGATTGCTTCGGTGAGCTGATCCAGATCGATGGCTCATATCATGACTGGTTTGAAGGCCGAGCTTCCAAATGCTGCTTGCTGGTTTATATCGATGACGCC
ACTGGAAAGCTGTTGCATCTGCGCTTTTGTGAGGCTGAAACGACCTTTGATTATATGCTTTCAACCCGAGCCTACATTGAGCAATACGGCAAGCCTTTAG
CGTTTTATAGCGATAAACACTCGGTATTCCGAGTGAATCAGAAATCGAGCCAAGATAGCCAGATCACGCAATTTGGGCGGATTCTGAATGAGTTAAATAT
TGATATTATCTTCGCCAACTCACCCCAGGCTAAAGGCCGTGTGGAACGTGCCAATAGAACACTCCAGGATCGCCTGATCAAGGAAATGCGCCTAGAAGGT
ATCTGTTCAATTGCCGAGGCAAATGCCTGGCTGCCCTGCTTTATTGAGCATTTCAATCAGAAGTTTGCCAAGTGTGCGCGAAACTCAAAGAATTTACATC
GGCCATTAACCGAATCTCATCTTGAACTGGATGATATTTTTACCTGGCAGGAACCGCGTAAGGTCACCAAGAATCTGACCCTGACCTATGACAAATGTAT
TTATCTGCTTGAACCGATAGAGCTGAATCATAAGCTTGTTGGGCAATATATTTCATTTCTGGAGTACCCGGATGGGACTGTGGCCCTCATGCACGAGGGA
CGAAAGCTCAACTACAGCATTTTCAATAAATTAGCTGGGCTACAGCAGAATGAGATCGTTGAGAATAAACGGTTAGGTACAGTTCTGGCACATATTCAGC
AACAGCATGAAGAGTTGGAAAAACAGAATAAACGTTCCCGTCTCAAGAAAAGTATGCCGAGCCGTAAAGCTCAGAAAGCTGTTATTGAACAAAGAAATTT
AAATCCTGTGCTTGACTCTTGTGGTTAAAAACAGGACATTTTAAATGGTTTTTCGCATAGACATTTTAATTGGTGAATAACA
TCACTATGTCTGACAAAGAAATTCAACGTCTTGCAGTTCTGCAAGACGTTCGAGATCATCGTATTACCCAAGTCCGTGCTGCTGAAATCCTGAATCTTTC
CACCCGTCAAATTACCCGGTTATTGCAGAAGCTCAATCAAGATGGTGTTTCAGGCATGACGCATGCCAGTCGTGGTCAACCTGGCCATCGTCGCCATGAT
GACTTGTTAAAATCAAAGTGCCTTTCCATTATTGCTGAACATTTGCTGGGCTTTGGACCCACCTTGGCGCATGAGAAGCTCAGCAGCATGTTTGGTCTGC
ATATCCCTGTAGAAACGGTTCGTCGCTGGATGACTGCAAATGACCTGTGGATTCCTCGATCCAAGCGTCTGAAACGTCCGTATCAGCCTAGATATAACCG
TGATTGCTTCGGTGAGCTGATCCAGATCGATGGCTCATATCATGACTGGTTTGAAGGCCGAGCTTCCAAATGCTGCTTGCTGGTTTATATCGATGACGCC
ACTGGAAAGCTGTTGCATCTGCGCTTTTGTGAGGCTGAAACGACCTTTGATTATATGCTTTCAACCCGAGCCTACATTGAGCAATACGGCAAGCCTTTAG
CGTTTTATAGCGATAAACACTCGGTATTCCGAGTGAATCAGAAATCGAGCCAAGATAGCCAGATCACGCAATTTGGGCGGATTCTGAATGAGTTAAATAT
TGATATTATCTTCGCCAACTCACCCCAGGCTAAAGGCCGTGTGGAACGTGCCAATAGAACACTCCAGGATCGCCTGATCAAGGAAATGCGCCTAGAAGGT
ATCTGTTCAATTGCCGAGGCAAATGCCTGGCTGCCCTGCTTTATTGAGCATTTCAATCAGAAGTTTGCCAAGTGTGCGCGAAACTCAAAGAATTTACATC
GGCCATTAACCGAATCTCATCTTGAACTGGATGATATTTTTACCTGGCAGGAACCGCGTAAGGTCACCAAGAATCTGACCCTGACCTATGACAAATGTAT
TTATCTGCTTGAACCGATAGAGCTGAATCATAAGCTTGTTGGGCAATATATTTCATTTCTGGAGTACCCGGATGGGACTGTGGCCCTCATGCACGAGGGA
CGAAAGCTCAACTACAGCATTTTCAATAAATTAGCTGGGCTACAGCAGAATGAGATCGTTGAGAATAAACGGTTAGGTACAGTTCTGGCACATATTCAGC
AACAGCATGAAGAGTTGGAAAAACAGAATAAACGTTCCCGTCTCAAGAAAAGTATGCCGAGCCGTAAAGCTCAGAAAGCTGTTATTGAACAAAGAAATTT
AAATCCTGTGCTTGACTCTTGTGGTTAAAAACAGGACATTTTAAATGGTTTTTCGCATAGACATTTTAATTGGTGAATAACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 94 | 1431 | + | No |
Chemistry : DDE
ORF sequence :
MLITMSDKEIQRLAVLQDVRDHRITQVRAAEILNLSTRQITRLLQKLNQDGVSGMTHASRGQPGHRRHDDLLKSKCLSIIAEHLLGFGPTLAHEKLSSMF
GLHIPVETVRRWMTANDLWIPRSKRLKRPYQPRYNRDCFGELIQIDGSYHDWFEGRASKCCLLVYIDDATGKLLHLRFCEAETTFDYMLSTRAYIEQYGK
PLAFYSDKHSVFRVNQKSSQDSQITQFGRILNELNIDIIFANSPQAKGRVERANRTLQDRLIKEMRLEGICSIAEANAWLPCFIEHFNQKFAKCARNSKN
LHRPLTESHLELDDIFTWQEPRKVTKNLTLTYDKCIYLLEPIELNHKLVGQYISFLEYPDGTVALMHEGRKLNYSIFNKLAGLQQNEIVENKRLGTVLAH
IQQQHEELEKQNKRSRLKKSMPSRKAQKAVIEQRNLNPVLDSCG
GLHIPVETVRRWMTANDLWIPRSKRLKRPYQPRYNRDCFGELIQIDGSYHDWFEGRASKCCLLVYIDDATGKLLHLRFCEAETTFDYMLSTRAYIEQYGK
PLAFYSDKHSVFRVNQKSSQDSQITQFGRILNELNIDIIFANSPQAKGRVERANRTLQDRLIKEMRLEGICSIAEANAWLPCFIEHFNQKFAKCARNSKN
LHRPLTESHLELDDIFTWQEPRKVTKNLTLTYDKCIYLLEPIELNHKLVGQYISFLEYPDGTVALMHEGRKLNYSIFNKLAGLQQNEIVENKRLGTVLAH
IQQQHEELEKQNKRSRLKKSMPSRKAQKAVIEQRNLNPVLDSCG
Blast result :
Comments
ISAba32 is 71% aa identical to the tnp of ISAjo2. The isolate D36 is recovered from a wound sample in a Sydney hospital in 2008 .
References
1] Hamidian M., Hall R.M (2015) Direct submission