ISHsp3

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AXCA01000015 ND Halomonas sp.
Halomonas sp. PBN3
DNA section
IS Length : 1027 bp

Ends


IR Length : 21/25

IRL : CCTGATTACGCATGTTGATCAGCCACCATTCCGCCAACCTGTCCTATACT
IRR : CCTGATTACGCATAAGGCTCAGCCATCTTCAGGAACCGATATGGCATCGG

Insertion site


Left flankDirect repeatRight flankDR Length
TCACTGTCTATATGACTAAATATAGGCA8

DNA sequence

CCTGATTACGCATGTTGATCAGCCACCATTCCGCCAACCTGTCCTATACTGAGGTTATATCCAGTAGAGGAGGCGACGTCATGGCTCGCAACCCTATCCA
GTTCCAGCCCGGCCTGTCGCTGCCGGCCTTCCTTGAGCAGTACGGCAGCGAAGGGCAATGCCGGGAGGCTCTCTTTCAGCATCGCTGGCCGCGGGGCTTC
GTCTGCCCCGACTGCGGCAACACGACCTACTGCCAACTCTCGCGTGGGCTCTACCAGTGCCATCGCTGCCATCATCAGACCTCGCTGACCGCTGGTACGA
TCTTCCATGGTACGCACCTGCCGCTGACCACCTGGTTCCTGGCGATCTATCTGCTCACCCAGCGCAAGAGCGGTATCTCGGCACTGCAGCTGTCCCGGGA
GCTCGGCGTCACCTACAACACGGCCTGGAAGCTCAAACACAAGCTGCTGCAGGTCATGCACGAACGCAACCAGGGAGAGACGCTCTCCGGGCGCATCGAG
ATCGATGACGCCTACCTGGGCGGTGAGCGGCCGGGAAAGCGTGGGCGCGGCGCTGAGCACAAGTTCCCGTTTGTCGCCGCCGTGCAAACCGATGAGGAGG
GGCACCCTCAGCGGGTTCAGCTGCGCCGTGTGAGCGGCTTTACCCTTGCCGAGTTACGTCGCTACGCCCAACAGGCCATTGCGCCTGGTAGTCAGGTCAT
CAGCGACGGCCTCGGCTGTTTCCGAGCCTTCGACACCCCTACCTACGCCCACGACCGTCACATCACCGGAGGTGGGCGTGCCAGTGTGGAGAACCCTGAG
TTCAACTGGGTCAACACCCTGCTGGGTAACGTCAAGAACGCCATCACGGGCACTTACCATGCCATTCGCGGGCAGCATGCCCCACGCTACCTGGCCGAAT
TCGAGTACCGCTTCAATCGGCGCTATGACCTCAAGGCCATGATTCCGCGCTTTCTCACGGTGGCGGCGAGGACCCCGCCGATGCCATATCGGTTCCTGAA
GATGGCTGAGCCTTATGCGTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
942 bp313 aa811022+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARNPIQFQPGLSLPAFLEQYGSEGQCREALFQHRWPRGFVCPDCGNTTYCQLSRGLYQCHRCHHQTSLTAGTIFHGTHLPLTTWFLAIYLLTQRKSGIS
ALQLSRELGVTYNTAWKLKHKLLQVMHERNQGETLSGRIEIDDAYLGGERPGKRGRGAEHKFPFVAAVQTDEEGHPQRVQLRRVSGFTLAELRRYAQQAI
APGSQVISDGLGCFRAFDTPTYAHDRHITGGGRASVENPEFNWVNTLLGNVKNAITGTYHAIRGQHAPRYLAEFEYRFNRRYDLKAMIPRFLTVAARTPP
MPYRFLKMAEPYA

 

Blast result :
Comments
ISHsp3 is 93% aa similar to ISMrsp2.
References
1] Thomas Jové (2015) Direct submission.
2] Overholt,W.A., Green,S.J., Marks,K.P., Venkatraman,R., Prakash,O. and Kostka,J.E.(2013) Genome Announc 1 (6), e01015-13.