ISVvu6

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JQDT01000052 ND Vibrio vulnificus
Vibrio vulnificus 101/4
DNA section
IS Length : 1091 bp

Ends


IR Length : 22/27

IRL : CTTGGATTCAAGTACGAAGTGCGACACCTCTGAACATAAAAACAGTAAGG
IRR : CTTAGTATCAAGTTTGAAGTGCGACACTTTCTACAGATGCGCATGAATAT

Insertion site


Left flankDirect repeatRight flankDR Length
TGTTAGGCATNNNNNNNNNN0

DNA sequence

CTTGGATTCAAGTACGAAGTGCGACACCTCTGAACATAAAAACAGTAAGGTGCGATAATCATGAACTTTGCTCCCGCCAAGAAGTAAAAAACATGAAATA
CACACACCTCACTGAGAACGAAAGGTATATGATTTCTGCGCTCAGAAAGCAAGGAATTAGTACCGCTAAAATAGCTAAACAACTGGGGCGCCATAAAGCC
ACTATCTATCGAGAAATTGAACGCAATTGTCGTTACAACAAGTTCTTCGATAGGTACTCTTATCAACCACGGCGAGCACAGCAAATGGCTCGTAACCGGC
TGAGCCGCTCGCGCAGAAACAAGCGCTACAGCAAAAGCGACTTTAGGTTACCTGAGGCCTTGCTACGACTGGATTGGAGCCCTGACCAAATCGTCGGATA
TCTAAGAATGAGAGGCTATCCAACAATGAGCCACGAGCTCATTTATCAGCACATTTGGAACGACAAAGCTCTCGGGGGAACGCTATGGAAACACCTACGG
CAATCTTCCAAGAAAAGGCGTAAAAGGTACAACTCAAAAGACAGTCGAGGACGGCTTGCAAATAAGCGTCATATTACCGAAAGACCAGAAAACGCTGAGC
ATCGAAAAGAGCCTGGTCATTGGGAAATTGATACTGTCGTTGGCCGCGGAACCAAGCACTGTATCGTGACTTTAGTCGACAGAATGACTGGCTACACTTT
TATCGGGCAAATGGACGATAGAACAAGCGAGTCGCTCAACGTAAGAATGAGCAAAATCATGACCCGCTCTGACTTACCTTTTAAGACGATAACTTCGGAT
AACGGCACTGAATTTCATGGTTACGCACAACTAGAAAAACACCATAACTGTCTGTTTTACTTTGCAAATCCATACCACTCATGGGAGCGAGGCACTAATG
AAAACACCAATGGTTTGATACGACAATACTTACCAAAACGAACTTCCATGTCACACGTGACACAGAAGCTATGCAATGAAATTGCACACAAATTAAATAC
GCGCCCACGCAAAAGACTTGGGTATAGAACACCACTGGAGTATATTCATGCGCATCTGTAGAAAGTGTCGCACTTCAAACTTGATACTAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa931061+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKYTHLTENERYMISALRKQGISTAKIAKQLGRHKATIYREIERNCRYNKFFDRYSYQPRRAQQMARNRLSRSRRNKRYSKSDFRLPEALLRLDWSPDQI
VGYLRMRGYPTMSHELIYQHIWNDKALGGTLWKHLRQSSKKRRKRYNSKDSRGRLANKRHITERPENAEHRKEPGHWEIDTVVGRGTKHCIVTLVDRMTG
YTFIGQMDDRTSESLNVRMSKIMTRSDLPFKTITSDNGTEFHGYAQLEKHHNCLFYFANPYHSWERGTNENTNGLIRQYLPKRTSMSHVTQKLCNEIAHK
LNTRPRKRLGYRTPLEYIHAHL

 

Blast result :
Comments
ISVvu6 is 96% aa similar to ISVa6.
References
1] Thomas Jové (2015) Direct submission
2] Koton,Y., Gordon,M., Chalifa-Caspi,V. and Bisharat,N. (2015) Front Microbiol 5, 803