ISVapa1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP001636 | ND | Variovorax paradoxus | Variovorax paradoxus S110 |
DNA section
IS Length : 1088 bp
Ends
IR Length : 23
IRL : AAGGGGTATCCTCTTAGCTCCAGCAACTGAGAGAGCACTGGATGGATGTA
IRR : AAGGGGTATCCTCTTAGCTCCAGAAGGTCTGAGTGACTGGATGAATATAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATACTACTGT | ATATTCAT | ACAGGTGTAC | 8 |
DNA sequence
AAGGGGTATCCTCTTAGCTCCAGCAACTGAGAGAGCACTGGATGGATGTACAGATATTAGCGCCGACAGCGGGCAAGGACTACCCCCAGACCTGGAATGA
ATTCCTGGACTGGTTTTCCACGGAGGATGACTGTCTCGCCTACCTGGAGCGGCTGCGCTGGGGCGCTGGGTTCGTCTGCCCGAAGTGCGGCAGCATTGGC
GAGGCGTACCGTGCCAGCCGCACCCGCCTGATGTGCCGCAGCTGCCAGCACCAGACCACGGTGACTGCCGGTACGATCTTCGACAAGACCCGCACGCCAC
TGCGTGTGTGGCTGGCCGCGGCTTGGTATCTGACCAACCAGAAGCAAGGCGTCAGTGCCTTGGGCCTGCAGCGTGTGCTGGGCCTGGGCAGCTACCAGAC
CGCCTGGACCATGCTGCACCGTTTGCGCCGCGCTATGGTGCGGCCCGAGCGGGATCGGCTCAAGGGCACGGTCGAGGTTGATGAGACCTATCTGGCGCTG
AGCGACCGCGAGAATCCGATTTCTCCCCAGGGGCGCAAGAACAGTACCTCTCAGGTGCTCGTCGTCCTGGCTGTGGAGGTGCTGGAGCCCAAGGGATTCG
GCCGGATCCGCCTGCGCCGCATCCCCAAGGACTCCGCCACCCATGTGATCCCATTTGTGCAGGAGAACGTTGAGCCAGGCGCCCAGGTGCGCACCGATGG
CTCTGCGGCCTATCGTTCACTGAAGGATCTCGGCTATGAGCACAAGCGCACGGTGGTGCTCGGCTCGCAGGTGCCGGCCCATGTGTCGATGGCCGGCGTC
CACCGCGTGGCCGCACTGATCAAGCGCTGGATTCTGGGTACGCATCATGGCTCGGTGCAGCCCGAACATCTGGACGCCTATCTCGATGAGTTCGTCTTCC
GCTTCAACCGTCGCACCTCAAGCTCGCGCGGCATGTTGTTCTACCGACTCTTGCAGCAGGCCGTGGTCACCCCACCGGTGACCTATCAGCAGGTGATTCA
GGCGGGTGCAAAACAGCGCCGAAAAGGATAGGATAACTGTATATTCATCCAGTCACTCAGACCTTCTGGAGCTAAGAGGATACCCCTT
ATTCCTGGACTGGTTTTCCACGGAGGATGACTGTCTCGCCTACCTGGAGCGGCTGCGCTGGGGCGCTGGGTTCGTCTGCCCGAAGTGCGGCAGCATTGGC
GAGGCGTACCGTGCCAGCCGCACCCGCCTGATGTGCCGCAGCTGCCAGCACCAGACCACGGTGACTGCCGGTACGATCTTCGACAAGACCCGCACGCCAC
TGCGTGTGTGGCTGGCCGCGGCTTGGTATCTGACCAACCAGAAGCAAGGCGTCAGTGCCTTGGGCCTGCAGCGTGTGCTGGGCCTGGGCAGCTACCAGAC
CGCCTGGACCATGCTGCACCGTTTGCGCCGCGCTATGGTGCGGCCCGAGCGGGATCGGCTCAAGGGCACGGTCGAGGTTGATGAGACCTATCTGGCGCTG
AGCGACCGCGAGAATCCGATTTCTCCCCAGGGGCGCAAGAACAGTACCTCTCAGGTGCTCGTCGTCCTGGCTGTGGAGGTGCTGGAGCCCAAGGGATTCG
GCCGGATCCGCCTGCGCCGCATCCCCAAGGACTCCGCCACCCATGTGATCCCATTTGTGCAGGAGAACGTTGAGCCAGGCGCCCAGGTGCGCACCGATGG
CTCTGCGGCCTATCGTTCACTGAAGGATCTCGGCTATGAGCACAAGCGCACGGTGGTGCTCGGCTCGCAGGTGCCGGCCCATGTGTCGATGGCCGGCGTC
CACCGCGTGGCCGCACTGATCAAGCGCTGGATTCTGGGTACGCATCATGGCTCGGTGCAGCCCGAACATCTGGACGCCTATCTCGATGAGTTCGTCTTCC
GCTTCAACCGTCGCACCTCAAGCTCGCGCGGCATGTTGTTCTACCGACTCTTGCAGCAGGCCGTGGTCACCCCACCGGTGACCTATCAGCAGGTGATTCA
GGCGGGTGCAAAACAGCGCCGAAAAGGATAGGATAACTGTATATTCATCCAGTCACTCAGACCTTCTGGAGCTAAGAGGATACCCCTT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 990 bp | 329 aa | 42 | 1031 | + | No |
Chemistry : DDE
ORF sequence :
MDVQILAPTAGKDYPQTWNEFLDWFSTEDDCLAYLERLRWGAGFVCPKCGSIGEAYRASRTRLMCRSCQHQTTVTAGTIFDKTRTPLRVWLAAAWYLTNQ
KQGVSALGLQRVLGLGSYQTAWTMLHRLRRAMVRPERDRLKGTVEVDETYLALSDRENPISPQGRKNSTSQVLVVLAVEVLEPKGFGRIRLRRIPKDSAT
HVIPFVQENVEPGAQVRTDGSAAYRSLKDLGYEHKRTVVLGSQVPAHVSMAGVHRVAALIKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSSSRGMLF
YRLLQQAVVTPPVTYQQVIQAGAKQRRKG
KQGVSALGLQRVLGLGSYQTAWTMLHRLRRAMVRPERDRLKGTVEVDETYLALSDRENPISPQGRKNSTSQVLVVLAVEVLEPKGFGRIRLRRIPKDSAT
HVIPFVQENVEPGAQVRTDGSAAYRSLKDLGYEHKRTVVLGSQVPAHVSMAGVHRVAALIKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSSSRGMLF
YRLLQQAVVTPPVTYQQVIQAGAKQRRKG
Blast result :
Comments
ISVapa1 is 92% aa similar to ISAisp1.
References
1] Thomas Jové (2015) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Orwin,P., Leadbetter,J.R., Spain,J.C. and Han,J.I. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Orwin,P., Leadbetter,J.R., Spain,J.C. and Han,J.I. (2009) Direct submission GenBank.