ISAcde1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ACQT01000538 | ND | Acidovorax delafieldii | Acidovorax delafieldii 2AN |
DNA section
IS Length : 1088 bp
Ends
IR Length : 28/34
IRL : AAGGGGTATCCATTTAGCTCCAGTGGCGCCAGAATAGCTGGATGGAAACC
IRR : AAGGGGTATCCACTTAGCTCCAGCGACCCCTCAAACACTGTGATTGCATC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
AAGGGGTATCCATTTAGCTCCAGTGGCGCCAGAATAGCTGGATGGAAACCCAGATGCTAACGCCAACTCCCGGGCAGGACTATCCTCGCACGTGGAACGA
ATTTCTTGACTGGTTTGCCACCGAAGAGGCCTGCCAGGCGTTCCTGGAGAAGCTGCGCTGGCCCGAAGGCTTCATCTGTCCGCGCTGTGGAAATACGGGT
GATGTGTATCGCGCCAGCCGCACCCGCCTGATGTGCCGGGCATGCCAGTACCAGGGCACGGTGACCTCAGGGACCATCTTTGACAAGACGCGTACGCCGC
TGCGGGTGTGGCTGGCTGCGGCGTGGTACCTGACCAATCAGAAGCAAGGCGTGAGCGCCTTGGGACTGCAGCGCGTATTGGGTTTGGGGAGTTACCAGAC
AGCGTGGACCATGTTGCACCGGTTTCGGCGCGCCATGGTCCGCCCGGACCGTGACAAGCTCAAGGGGCTTGTCGAGGTGGATGAAGCCTACCTGTCCATT
ACGGATCGCAAAAATCCCGCCACCCCTGCGGGGCGCAAGAGCAGCACCACCAAAGTGTTGATGGTCATGGCGGTGGAGATCGTGCAGCCCCAGGGGTTTG
GGCGCATCCGATTGCGCCGCATCGACCGAGACTCCGCATCCCACGTCATCCCCTTCGTGCAGGAGGTGGTCGAGCCCGCAGCCCAGATACGCACGGACGG
CTCGGCGGCGTACCGCTCCCTGGGAGAACTGGGTTACATCCACCAGCGCACCGTCATGCTGGGCTCAAGTGTGCCTGCCCATGTGTCCATGGCGGGAGTT
CACCGGGTCGCCTCCTTGGTTCAGCGCTGGGTGCTGGGAACGCACCACGGCTCCGTGCAACCCGAGCACCTGGATGCTTATCTCGATGAATTCGTATTCC
GCTTCAACCGGCGCACATCCAGCTCGCGCGGGATGCTGTTTTACCGCCTACTGCAGCAAGCGGTGGTCACGCCGCCGGTGACGTATGCGGACGTCGTGAG
CAAGAACACCGGTGGGACGCAATCGGATATTATTACTGGATGCAATCACAGTGTTTGAGGGGTCGCTGGAGCTAAGTGGATACCCCTT
ATTTCTTGACTGGTTTGCCACCGAAGAGGCCTGCCAGGCGTTCCTGGAGAAGCTGCGCTGGCCCGAAGGCTTCATCTGTCCGCGCTGTGGAAATACGGGT
GATGTGTATCGCGCCAGCCGCACCCGCCTGATGTGCCGGGCATGCCAGTACCAGGGCACGGTGACCTCAGGGACCATCTTTGACAAGACGCGTACGCCGC
TGCGGGTGTGGCTGGCTGCGGCGTGGTACCTGACCAATCAGAAGCAAGGCGTGAGCGCCTTGGGACTGCAGCGCGTATTGGGTTTGGGGAGTTACCAGAC
AGCGTGGACCATGTTGCACCGGTTTCGGCGCGCCATGGTCCGCCCGGACCGTGACAAGCTCAAGGGGCTTGTCGAGGTGGATGAAGCCTACCTGTCCATT
ACGGATCGCAAAAATCCCGCCACCCCTGCGGGGCGCAAGAGCAGCACCACCAAAGTGTTGATGGTCATGGCGGTGGAGATCGTGCAGCCCCAGGGGTTTG
GGCGCATCCGATTGCGCCGCATCGACCGAGACTCCGCATCCCACGTCATCCCCTTCGTGCAGGAGGTGGTCGAGCCCGCAGCCCAGATACGCACGGACGG
CTCGGCGGCGTACCGCTCCCTGGGAGAACTGGGTTACATCCACCAGCGCACCGTCATGCTGGGCTCAAGTGTGCCTGCCCATGTGTCCATGGCGGGAGTT
CACCGGGTCGCCTCCTTGGTTCAGCGCTGGGTGCTGGGAACGCACCACGGCTCCGTGCAACCCGAGCACCTGGATGCTTATCTCGATGAATTCGTATTCC
GCTTCAACCGGCGCACATCCAGCTCGCGCGGGATGCTGTTTTACCGCCTACTGCAGCAAGCGGTGGTCACGCCGCCGGTGACGTATGCGGACGTCGTGAG
CAAGAACACCGGTGGGACGCAATCGGATATTATTACTGGATGCAATCACAGTGTTTGAGGGGTCGCTGGAGCTAAGTGGATACCCCTT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1017 bp | 338 aa | 42 | 1058 | + | No |
Chemistry : DDE
ORF sequence :
METQMLTPTPGQDYPRTWNEFLDWFATEEACQAFLEKLRWPEGFICPRCGNTGDVYRASRTRLMCRACQYQGTVTSGTIFDKTRTPLRVWLAAAWYLTNQ
KQGVSALGLQRVLGLGSYQTAWTMLHRFRRAMVRPDRDKLKGLVEVDEAYLSITDRKNPATPAGRKSSTTKVLMVMAVEIVQPQGFGRIRLRRIDRDSAS
HVIPFVQEVVEPAAQIRTDGSAAYRSLGELGYIHQRTVMLGSSVPAHVSMAGVHRVASLVQRWVLGTHHGSVQPEHLDAYLDEFVFRFNRRTSSSRGMLF
YRLLQQAVVTPPVTYADVVSKNTGGTQSDIITGCNHSV
KQGVSALGLQRVLGLGSYQTAWTMLHRFRRAMVRPDRDKLKGLVEVDEAYLSITDRKNPATPAGRKSSTTKVLMVMAVEIVQPQGFGRIRLRRIDRDSAS
HVIPFVQEVVEPAAQIRTDGSAAYRSLGELGYIHQRTVMLGSSVPAHVSMAGVHRVASLVQRWVLGTHHGSVQPEHLDAYLDEFVFRFNRRTSSSRGMLF
YRLLQQAVVTPPVTYADVVSKNTGGTQSDIITGCNHSV
Blast result :
Comments
ISAcde1 is 96% aa similar to ISAisp1.
References
1] Thomas Jové (2015) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Shelobolina,E.S., Picardal,F., Roden,E. and Emerson,D. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Shelobolina,E.S., Picardal,F., Roden,E. and Emerson,D. (2009) Direct submission GenBank.