ISKox2

  • Family Tn3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003684 ND Klebsiella oxytoca
Klebsiella oxytoca
Aeromonas salmonicida
Klebsiella michiganensis E718 plasmid pKOX_R1
Methylophaga frappieri JAM7
DNA section
IS Length : 3211 bp

Ends


IR Length : 43

IRL : GGGGTTCTAGGGATTTTCCCCTCTAAAGTAACATAAATCGCCATACTCAC
IRR : GGGGTTCTAGGGATTTTCCCCTCTAAAGTAACATAAATCGCCACAACCCT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTCCATTAATTTGAAGTTA0
TTTCCATTTCAAAGCCGCGA0

DNA sequence

GGGGTTCTAGGGATTTTCCCCTCTAAAGTAACATAAATCGCCATACTCACCATATTTAAAGGCATACAAAGGTGGGTTACTTCTCCAAAGTATGGCAAAT
TATGAGGTTAACAACCCCTTAAACTTAATTTAATTCCTATGGCTATAAAAAACGAACTATCAATTCTTACCAAAGCTGAGCAGCTTGATCTATATTCTCC
GCCGCTATTATCACTTGAACAACAACGATTGTATTTTACGCCAAACGAGATCGAGTTAACAGAGTTGAAAAGTATTCGCCTAAGGAACCACCGATGCTAT
TTCATTGCGTTATTAGGGTATTTTAAGTCTAAGCCTGTGATTCTTTCACCTAGCTTTAACCTCATCTTTGACGATATGCAGTTTATTTCAACGCAAGTTC
AAGGAGGCAAAGGGATCAGGCCTTTCAGCATTAATAAGATGCAGCGTGACCGTATATATCAAAGAATACTGAGGTTATTAAACTATCAGAAATGGGACGA
AAGTCTGCACTTTGCGCCGCTGTACGAACATCTTGTTATGGTCGGCAAAGCTTGGCTTGAGCCTCGTTATCTATTCGATGCAGCCGCTGAATATCTAGCA
ACGCATAGAATTGCCATCCCTAAATATACTGTCTTACAAAAGCTTATCAGTCGTGTTATCCAACAGGTCAAGAAGGCGTTAAATAATAAGCTTCGTATTC
ATGTTTCATCTGAACTACACGGATTTCTAAATACTATTATCGATGACAAAGATGGGCTCTCCTTAAGCCAGCTTCGAGCCGGTGCAAAAAGCGTTATGGT
GACAGAGCTAAAAAAAGAACTGACGGTGTATCATCAGTTACAGCCTTATACAAGACAGATTGATAATGCTGTTAAGGGCTTAGCCTTATCGTCTAAAAAC
CAACAACACTTCGGTGAAATGGTGGATTATTATGGCAGTAAACTAAAACGCTTTAAGCGTCCACAGCAACACCTATGGTTGCTGTGTTTTCTGACTCAAC
GCATACGGCAAAGCCTAGAGCGATTGGCTGATGGGTTTATTCATCATATCCGTAAACAACAAGAAGCTGCGCATGCGTTTGCCCAACAGGCAGTGTTTGA
CTCATGGAGGTCAGCTGCAGACAATGTCACCAAAGCCGCAGAATTACTGCATCTGTTTGTTGATGACAGTATCGACGATAATCAACCATTTGCAACGGTT
AGGCAACAAGCATTAAGTGTAATGAATAACCAAGATATAGAAACGCTATGCCTGTACTTAAAAAAGCAAAAACGCACGGTAGAAGAATATCAATGGCAAT
ATTATGATGATCAAAACGGGTTAATTGAGCAGTTATTAAGGCCCGTGTTTCTATGTCTTGAATGCCAAGCAGGTAAAGGCTCAGAAGCATTAGTGACCCA
GCTCAAAACCACAAAAACAGAACTATTAGCAGGTAATACATTGCAAACAATGGATAGTACACTTATCCAACAAAAACATCGTCCATGGTTAATTAACAAG
GATGTTGTTCATCCACAGCGATACGAATGGTTGCTTTACCGTCAACTGGCTTCTCGGCTTAATGGTCGAATTTACTTATCAAACGTCACTAAATATCGTG
CGCTAGAAGACGACTTAATTGCATCGTCAATACAGCCTGATCTATTGGCATCATCAACATTGGAAAAGCTAAAGCAGCCGATTCAGAAGCTACTGCAAGT
AGAACAAATACGCTTAACAACATCCCTAGAAGATGTTGCTCGTCACATTGATAATGGTGATAACCGCAATGTGATCATGAAGAGCCGAAGTGGCACACGA
TGGCGACTGCCAGTTAAAGGCTCCCAATCACTTGTCAACAACCCTTTCTTTAAACAAATGATCCCCGTCAGTATTGCTGATGTGTTGCGTTATGTTGAAC
AAGAAACCAACTTTATGCAATGCTTCGCACACGTGCTGCCAATACAAAAACAAGTAGGCGCCAATCAGGATGATTTATTGGCTATTCTAATTGCGAATGC
GACACATCGCGGCGTATATGGGATGGCACAAATATCTGATCGCAGTTATGAGCATCTAAGCACTATACAAGCTAATTATATTAGGCCTGAAACCTTGCAA
GAGGCTAGTGATATCATCAATAACGCAGTAGCGGCACTCCCTATTTTCCGCCACTATCACATCCAAGAAGACGTCCTGCACGCCAGTACCGATGGGCAAA
AATTTGAAACTCACCTTGAGACTTTTAAAACTCGCTACTCCTCGAAATACTTCGGCACCAACAAAGGTATTACGGCCATGACGTTAGTTGCCAATCATAG
TGCGTTAAATGCCCGTATCATAGGATCTAATGAGCATGAGTCCCATTATATTTACGACTTACTACAATCTAATACTAGTGATCTTAAGCCAGATGTCCTC
TCAACCGACACCCATGGTGTTAATCATGTTAATTATGCCTTATTGGATTTATGCGGTTATAGTTTTGCGCCTAGGTATGCTCAGTTCACCAGTGTGATCA
ATGACCTATTTAACGTAACTGAAAGCGACGACGGAAACACGCATCTGGCGCTGAAAAAGCCGATAAAAATGAATGTGATTGAAGAAGGCTGGCAGGATAT
TCAGCGTATTGTGTTATCCCTTCAAGAAAAACGCACAACACAGGCATTGCTAGTACGCAAATTATCTGGTTATCCATCTAGACACCCTATATTACAAGCA
TTAACGGAATATAATAGGCTCATCAAAGCCCAATATTTACTTGATTATATTGATGATGCAAGTCTGCGCCAATATGTTCAACGAGCACTGAACCGAGGCG
AAGCCTGGCATTTCCTCAGGCGAGCTATTGCATCGGTCAATCGTGACCAGTTCCGTGGAAAAAACGAATCAGAAATAGTCGTCTGGAACGAGTGTGCCCG
TTTGACGGCAAATGCTATTATCTACTTTAACTCGATGATCCTAAGTCATCTATTACTGCACTTTGAAGAAGTTGGTGACGAGGAAAAAGCAGCAATAACT
CGACAAGTATCACCCGTTGCATGGCAGAACATTAATCTGAGCGGCACTTATCAGTTCGCTAGTAACCGCAAACTACCTGATTTACAGGAAATAACTAGGC
CTATTGTTGAAAATGAAGTCTAAAATGAAAGGTAACCCAGCTCCACAAGCCATTAACTGCGAGGGTTGTGGCGATTTATGTTACTTTAGAGGGGAAAATC
CCTAGAACCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
2985 bp994 aa1393123+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAIKNELSILTKAEQLDLYSPPLLSLEQQRLYFTPNEIELTELKSIRLRNHRCYFIALLGYFKSKPVILSPSFNLIFDDMQFISTQVQGGKGIRPFSINK
MQRDRIYQRILRLLNYQKWDESLHFAPLYEHLVMVGKAWLEPRYLFDAAAEYLATHRIAIPKYTVLQKLISRVIQQVKKALNNKLRIHVSSELHGFLNTI
IDDKDGLSLSQLRAGAKSVMVTELKKELTVYHQLQPYTRQIDNAVKGLALSSKNQQHFGEMVDYYGSKLKRFKRPQQHLWLLCFLTQRIRQSLERLADGF
IHHIRKQQEAAHAFAQQAVFDSWRSAADNVTKAAELLHLFVDDSIDDNQPFATVRQQALSVMNNQDIETLCLYLKKQKRTVEEYQWQYYDDQNGLIEQLL
RPVFLCLECQAGKGSEALVTQLKTTKTELLAGNTLQTMDSTLIQQKHRPWLINKDVVHPQRYEWLLYRQLASRLNGRIYLSNVTKYRALEDDLIASSIQP
DLLASSTLEKLKQPIQKLLQVEQIRLTTSLEDVARHIDNGDNRNVIMKSRSGTRWRLPVKGSQSLVNNPFFKQMIPVSIADVLRYVEQETNFMQCFAHVL
PIQKQVGANQDDLLAILIANATHRGVYGMAQISDRSYEHLSTIQANYIRPETLQEASDIINNAVAALPIFRHYHIQEDVLHASTDGQKFETHLETFKTRY
SSKYFGTNKGITAMTLVANHSALNARIIGSNEHESHYIYDLLQSNTSDLKPDVLSTDTHGVNHVNYALLDLCGYSFAPRYAQFTSVINDLFNVTESDDGN
THLALKKPIKMNVIEEGWQDIQRIVLSLQEKRTTQALLVRKLSGYPSRHPILQALTEYNRLIKAQYLLDYIDDASLRQYVQRALNRGEAWHFLRRAIASV
NRDQFRGKNESEIVVWNECARLTANAIIYFNSMILSHLLLHFEEVGDEEKAAITRQVSPVAWQNINLSGTYQFASNRKLPDLQEITRPIVENEV

 

Blast result :
Comments
ISKox2 is 87% aa similar to ISShfr9.
References
1] Dongsheng Zhou (2016) Direct submission
2] Huang,T.W., Wang,J.T., Lauderdale,T.L., Liao,T.L., Lai,J.F., Tan,M.C., Lin,A.C., Chen,Y.T., Tsai,S.F. and Chang,S.C. (2013) Antimicrob. Agents Chemother. 57 (8), 4072-4076.
3] Villeneuve,C., Martineau,C., Mauffrey,F. and Villemur,R. (2012) J. Bacteriol. 194 (15), 4126-4127.