ISAwo1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LN554847 ND Aliivibrio wodanis
Aliivibrio wodanis AWOD1
DNA section
IS Length : 1018 bp

Ends


IR Length : 20/24

IRL : cctgattaccacttaaactcagcttattagactacacttaaagtgaagcg
IRR : cctgaTTACCATCGAGACTCAGCTAGCTTAAGCAACCGCTCTGGCATCGG

Insertion site


Left flankDirect repeatRight flankDR Length
TAAAAACTTATATATTTATTAATAGTGA8
TGTTGAATTATATGGTTATGTAGAATAT8
TTTTTTTCTAAAAATTTATAAGCAATAC8
TTTTATTAATAAAAAAATAATAAGTTTTAGAGACTACCTT0

DNA sequence

CCTGATTACCACTTAAACTCAGCTTATTAGACTACACTTAAAGTGAAGCGAAAAATGAGGTGGTTATCATGGCTAAAAATAAAGTCCAATTTCAAAAAAG
TATTTCAATACATGGGTTTATTTCACAGTTAGGTACTGAAGAACAATGCCGTAAACGACTGTTCGATATGCGATGGCCTGCTGGTTATCGATGTGATAAT
TGCGGTCATGATAAATACTGCGAACTTAAATCAAGGCAGCTTTTCCAATGTAACCTGTGCCACTACCAAGGCTCATTAACTTCTGGAACCTTGTTTTCCG
CGTCAAAATTGCCATTAAACATATGGTTTTTAGCTATTTATCTCATCACTCAAGAGAAGAATGGCATTTCAGCATTAGAGCTTTCTCGACAGCTTGGTAT
TTCTTATAACGCGGCATGGCGTATGAAACATAAACTAATGCAAGCTATGAAGGAACGAGACGATGAAACACAATTGAATGGTTACATTCAACTAGATGAT
GTTTATTGGGGAGGCGTTCAACGTGGCACTCGTGGTAGAGGGGCAAAAGGAAAACGTCCTTTCGTAGCGGCGGTATCTATGAATGGCGAAGGACATCCAA
TAAGTATGCGATTTAGTGTTGTGACTGGCTTTAAAATCAAAGAACTAACGAGTTGGGCAAAAGCGCATTTAACGCCAAAATCACTGGTTATCTCTGATGG
TTTAGCTTGCTTTAAAGGCGTTGAGAAAGCCGATGTGTTTCACCATGCTATTGTTACAGGTGGCGGAGCTGATTGCGTTAAATTACCCTACTTTCAGTGG
GTCAACACCATGATTAGTAATGTAAAAAACTCAATGCATGGGACTTACCATGCAATAAACAAGAAACACCTTCCTCGTTATTTGGGAGAGTTTTGTTTTA
AGTTCAATAGGCGCTTCAATCTTGAAAAGATGCTTGATCAGCTTATTTACTCAAGTATTCAAACTGCACCGATGCCAGAGCGGTTGCTTAAGCTAGCTGA
GTCTCGATGGTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
945 bp314 aa691013+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKNKVQFQKSISIHGFISQLGTEEQCRKRLFDMRWPAGYRCDNCGHDKYCELKSRQLFQCNLCHYQGSLTSGTLFSASKLPLNIWFLAIYLITQEKNGI
SALELSRQLGISYNAAWRMKHKLMQAMKERDDETQLNGYIQLDDVYWGGVQRGTRGRGAKGKRPFVAAVSMNGEGHPISMRFSVVTGFKIKELTSWAKAH
LTPKSLVISDGLACFKGVEKADVFHHAIVTGGGADCVKLPYFQWVNTMISNVKNSMHGTYHAINKKHLPRYLGEFCFKFNRRFNLEKMLDQLIYSSIQTA
PMPERLLKLAESRW

 

Blast result :
Comments
ISAwo1 is 75% aa similar to ISPma1.
References
1] Thomas Jové (2016) Direct submission.
2] Hjerde,Erik (2014) Direct GenBnak submission.