ISAwo1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN554847 | ND | Aliivibrio wodanis | Aliivibrio wodanis AWOD1 |
DNA section
IS Length : 1018 bp
Ends
IR Length : 20/24
IRL : cctgattaccacttaaactcagcttattagactacacttaaagtgaagcg
IRR : cctgaTTACCATCGAGACTCAGCTAGCTTAAGCAACCGCTCTGGCATCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAAAAACTTA | TATATTTA | TTAATAGTGA | 8 |
TGTTGAATTA | TATGGTTA | TGTAGAATAT | 8 |
TTTTTTTCTA | AAAATTTA | TAAGCAATAC | 8 |
TTTTATTAATAAAAAAATAA | TAAGTTTTAGAGACTACCTT | 0 |
DNA sequence
CCTGATTACCACTTAAACTCAGCTTATTAGACTACACTTAAAGTGAAGCGAAAAATGAGGTGGTTATCATGGCTAAAAATAAAGTCCAATTTCAAAAAAG
TATTTCAATACATGGGTTTATTTCACAGTTAGGTACTGAAGAACAATGCCGTAAACGACTGTTCGATATGCGATGGCCTGCTGGTTATCGATGTGATAAT
TGCGGTCATGATAAATACTGCGAACTTAAATCAAGGCAGCTTTTCCAATGTAACCTGTGCCACTACCAAGGCTCATTAACTTCTGGAACCTTGTTTTCCG
CGTCAAAATTGCCATTAAACATATGGTTTTTAGCTATTTATCTCATCACTCAAGAGAAGAATGGCATTTCAGCATTAGAGCTTTCTCGACAGCTTGGTAT
TTCTTATAACGCGGCATGGCGTATGAAACATAAACTAATGCAAGCTATGAAGGAACGAGACGATGAAACACAATTGAATGGTTACATTCAACTAGATGAT
GTTTATTGGGGAGGCGTTCAACGTGGCACTCGTGGTAGAGGGGCAAAAGGAAAACGTCCTTTCGTAGCGGCGGTATCTATGAATGGCGAAGGACATCCAA
TAAGTATGCGATTTAGTGTTGTGACTGGCTTTAAAATCAAAGAACTAACGAGTTGGGCAAAAGCGCATTTAACGCCAAAATCACTGGTTATCTCTGATGG
TTTAGCTTGCTTTAAAGGCGTTGAGAAAGCCGATGTGTTTCACCATGCTATTGTTACAGGTGGCGGAGCTGATTGCGTTAAATTACCCTACTTTCAGTGG
GTCAACACCATGATTAGTAATGTAAAAAACTCAATGCATGGGACTTACCATGCAATAAACAAGAAACACCTTCCTCGTTATTTGGGAGAGTTTTGTTTTA
AGTTCAATAGGCGCTTCAATCTTGAAAAGATGCTTGATCAGCTTATTTACTCAAGTATTCAAACTGCACCGATGCCAGAGCGGTTGCTTAAGCTAGCTGA
GTCTCGATGGTAATCAGG
TATTTCAATACATGGGTTTATTTCACAGTTAGGTACTGAAGAACAATGCCGTAAACGACTGTTCGATATGCGATGGCCTGCTGGTTATCGATGTGATAAT
TGCGGTCATGATAAATACTGCGAACTTAAATCAAGGCAGCTTTTCCAATGTAACCTGTGCCACTACCAAGGCTCATTAACTTCTGGAACCTTGTTTTCCG
CGTCAAAATTGCCATTAAACATATGGTTTTTAGCTATTTATCTCATCACTCAAGAGAAGAATGGCATTTCAGCATTAGAGCTTTCTCGACAGCTTGGTAT
TTCTTATAACGCGGCATGGCGTATGAAACATAAACTAATGCAAGCTATGAAGGAACGAGACGATGAAACACAATTGAATGGTTACATTCAACTAGATGAT
GTTTATTGGGGAGGCGTTCAACGTGGCACTCGTGGTAGAGGGGCAAAAGGAAAACGTCCTTTCGTAGCGGCGGTATCTATGAATGGCGAAGGACATCCAA
TAAGTATGCGATTTAGTGTTGTGACTGGCTTTAAAATCAAAGAACTAACGAGTTGGGCAAAAGCGCATTTAACGCCAAAATCACTGGTTATCTCTGATGG
TTTAGCTTGCTTTAAAGGCGTTGAGAAAGCCGATGTGTTTCACCATGCTATTGTTACAGGTGGCGGAGCTGATTGCGTTAAATTACCCTACTTTCAGTGG
GTCAACACCATGATTAGTAATGTAAAAAACTCAATGCATGGGACTTACCATGCAATAAACAAGAAACACCTTCCTCGTTATTTGGGAGAGTTTTGTTTTA
AGTTCAATAGGCGCTTCAATCTTGAAAAGATGCTTGATCAGCTTATTTACTCAAGTATTCAAACTGCACCGATGCCAGAGCGGTTGCTTAAGCTAGCTGA
GTCTCGATGGTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
945 bp | 314 aa | 69 | 1013 | + | No |
Chemistry : DDE
ORF sequence :
MAKNKVQFQKSISIHGFISQLGTEEQCRKRLFDMRWPAGYRCDNCGHDKYCELKSRQLFQCNLCHYQGSLTSGTLFSASKLPLNIWFLAIYLITQEKNGI
SALELSRQLGISYNAAWRMKHKLMQAMKERDDETQLNGYIQLDDVYWGGVQRGTRGRGAKGKRPFVAAVSMNGEGHPISMRFSVVTGFKIKELTSWAKAH
LTPKSLVISDGLACFKGVEKADVFHHAIVTGGGADCVKLPYFQWVNTMISNVKNSMHGTYHAINKKHLPRYLGEFCFKFNRRFNLEKMLDQLIYSSIQTA
PMPERLLKLAESRW
SALELSRQLGISYNAAWRMKHKLMQAMKERDDETQLNGYIQLDDVYWGGVQRGTRGRGAKGKRPFVAAVSMNGEGHPISMRFSVVTGFKIKELTSWAKAH
LTPKSLVISDGLACFKGVEKADVFHHAIVTGGGADCVKLPYFQWVNTMISNVKNSMHGTYHAINKKHLPRYLGEFCFKFNRRFNLEKMLDQLIYSSIQTA
PMPERLLKLAESRW
Blast result :
Comments
ISAwo1 is 75% aa similar to ISPma1.
References
1] Thomas Jové (2016) Direct submission.
2] Hjerde,Erik (2014) Direct GenBnak submission.
2] Hjerde,Erik (2014) Direct GenBnak submission.