ISAfe18
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LVXZ01000081 | ND | Acidithiobacillus ferrooxidans | Acidithiobacillus ferrooxidans BY0502 |
DNA section
IS Length : 1111 bp
Ends
IR Length : 22/27
IRL : TATGCTTATCGGGTTGTCTCCCAAGACTACTACCGGTAGGATGTTGGGCA
IRR : CGTGCTTATCGGGTTAGCTCCCAAGCCCGCTAGATGTAGTGGATCGTGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGTCTATAA | CGACGAAG | tacatcgcga | 8 |
DNA sequence
TATGCTTATCGGGTTGTCTCCCAAGACTACTACCGGTAGGATGTTGGGCATCTGTTCCAATGTGTGTCAACTATGGTTATCGACGTGCTTCAGCGATACG
ACTTGCCGTTTCCGCGCTCGCTTCCAGAGTTCCAGCGACTGTTCTCGAACGAAGCAGCATGCGCGGCCTACCTTGAGCGCGCGAGATGGAGTGATGGATT
CCTCTGTGACCACTGCGGCTCGCCTGATGAGCCGTACCGATTTGCTAATCGCCCCGGCGTTCTCCGGTGTCGCCATTGCAACCGCGATACGAGCCTCACC
GCTGGCACCGTCATGGAGCGCACACACACGCCGCTCTCGGTTTGGTTCTGGGCGGCGTATTTGGTCACCAGTCAGACACCCGGCATATCGGCTGTTCAGT
TCCAGCGGCAACTCGGATTGTCGTGCTACGAAACTGCCTTCCAGATTCTTCACAAGCTGCGCGCCGGCATGGTGCGACCAGATCAGGATTGGATCGGCGG
TAAGCCCGAAGAAGTCGTCGAGGCCGATGAAACCTACGTGGGCGGACGTACGCGCGGCAAGGGGCGCGGCGTCCATGATATGGTCATCGTGGCCGGTGCT
GTCGAAGTTCGTCAGCGCAAGCATACCAGCAGCCTTAACAAGCGGAAGAGTGGGCGGTATGCCGGTCGTGTCAGGCTCGCCCTGGTGCCGGACAGAAGCA
CCAAGTCTTTGGGTGGCTTCATCGAAAGCGCCGTGGCGCCAGGCACCACCATTATCACCGACGACTGGAGCGGCTACGCTGGCCTTGCCAAGCGCAACTA
TCTCCACACAGCTGTCCCGGAACGGGGCGATATGCAAGTCTCCGAATCCTTTCTGCCTATCATCCACCTCGTCTTCTCCAATCTCAAAACCTGGCTGCGC
GGCATCCATCACGGCGTCAGCCAGCAACATCTGCAGGCGTACCTCAATGAGTTCACGTTCCGTTTCAACCGCCGCTTCTACCCCTTCAACGCCTTCCGCT
CCCTGCTTGGCATCGCGGGCGATGTCACCGCGCCAACCTATGCCGAGCTTTATGCCAAAAAATCACGATCCACTACATCTAGCGGGCTTGGGAGCTAACC
CGATAAGCACG
ACTTGCCGTTTCCGCGCTCGCTTCCAGAGTTCCAGCGACTGTTCTCGAACGAAGCAGCATGCGCGGCCTACCTTGAGCGCGCGAGATGGAGTGATGGATT
CCTCTGTGACCACTGCGGCTCGCCTGATGAGCCGTACCGATTTGCTAATCGCCCCGGCGTTCTCCGGTGTCGCCATTGCAACCGCGATACGAGCCTCACC
GCTGGCACCGTCATGGAGCGCACACACACGCCGCTCTCGGTTTGGTTCTGGGCGGCGTATTTGGTCACCAGTCAGACACCCGGCATATCGGCTGTTCAGT
TCCAGCGGCAACTCGGATTGTCGTGCTACGAAACTGCCTTCCAGATTCTTCACAAGCTGCGCGCCGGCATGGTGCGACCAGATCAGGATTGGATCGGCGG
TAAGCCCGAAGAAGTCGTCGAGGCCGATGAAACCTACGTGGGCGGACGTACGCGCGGCAAGGGGCGCGGCGTCCATGATATGGTCATCGTGGCCGGTGCT
GTCGAAGTTCGTCAGCGCAAGCATACCAGCAGCCTTAACAAGCGGAAGAGTGGGCGGTATGCCGGTCGTGTCAGGCTCGCCCTGGTGCCGGACAGAAGCA
CCAAGTCTTTGGGTGGCTTCATCGAAAGCGCCGTGGCGCCAGGCACCACCATTATCACCGACGACTGGAGCGGCTACGCTGGCCTTGCCAAGCGCAACTA
TCTCCACACAGCTGTCCCGGAACGGGGCGATATGCAAGTCTCCGAATCCTTTCTGCCTATCATCCACCTCGTCTTCTCCAATCTCAAAACCTGGCTGCGC
GGCATCCATCACGGCGTCAGCCAGCAACATCTGCAGGCGTACCTCAATGAGTTCACGTTCCGTTTCAACCGCCGCTTCTACCCCTTCAACGCCTTCCGCT
CCCTGCTTGGCATCGCGGGCGATGTCACCGCGCCAACCTATGCCGAGCTTTATGCCAAAAAATCACGATCCACTACATCTAGCGGGCTTGGGAGCTAACC
CGATAAGCACG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1026 bp | 341 aa | 73 | 1098 | + | No |
Chemistry : DDE
ORF sequence :
MVIDVLQRYDLPFPRSLPEFQRLFSNEAACAAYLERARWSDGFLCDHCGSPDEPYRFANRPGVLRCRHCNRDTSLTAGTVMERTHTPLSVWFWAAYLVTS
QTPGISAVQFQRQLGLSCYETAFQILHKLRAGMVRPDQDWIGGKPEEVVEADETYVGGRTRGKGRGVHDMVIVAGAVEVRQRKHTSSLNKRKSGRYAGRV
RLALVPDRSTKSLGGFIESAVAPGTTIITDDWSGYAGLAKRNYLHTAVPERGDMQVSESFLPIIHLVFSNLKTWLRGIHHGVSQQHLQAYLNEFTFRFNR
RFYPFNAFRSLLGIAGDVTAPTYAELYAKKSRSTTSSGLGS
QTPGISAVQFQRQLGLSCYETAFQILHKLRAGMVRPDQDWIGGKPEEVVEADETYVGGRTRGKGRGVHDMVIVAGAVEVRQRKHTSSLNKRKSGRYAGRV
RLALVPDRSTKSLGGFIESAVAPGTTIITDDWSGYAGLAKRNYLHTAVPERGDMQVSESFLPIIHLVFSNLKTWLRGIHHGVSQQHLQAYLNEFTFRFNR
RFYPFNAFRSLLGIAGDVTAPTYAELYAKKSRSTTSSGLGS
Blast result :
Comments
ISAfe18 is 91% aa similar to ISCARN100.
References
1] Thomas Jové (2016) Direct submission.
2] Zhou,Z. (2016) Direct GenBank submission.
2] Zhou,Z. (2016) Direct GenBank submission.