ISVa17
- Family IS1634
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Vibrio anguillarum | Vibrio anguillarum Vibrio anguillarum, serovar O2 (VIB12) |
DNA section
IS Length : 1820 bp
Ends
IR Length : 21/24
IRL : CCGACATTCCGCACCCTATTATAGGTATTAATTATCGTTTTTTAGCGACA
IRR : CCCGACATTCCGCACCCCATTTTATGAATAAATTTGCAGGTATGTTGGCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| atgtgtattt | ttataa | tggataaaaa | 6 |
| caaaagcgtg | atttat | ataaacttat | 6 |
| ccatatgagc | atacat | gccgtctctc | 6 |
| aactcttcag | ataaag | cacgggtttc | 6 |
DNA sequence
CCGACATTCCGCACCCTATTATAGGTATTAATTATCGTTTTTTAGCGACACGTTTAAAGCAAATGCCGACGTGATAGATTTGTGAATATTGATATCACAC
TGAAATTGTAAAATCCCGCATGAAATAAAAAAAAGCTTGACGGCGATCCCCATATTTGATCTATTAGTTATCTTTGGGCGATGAAAATTATGACCATATC
ATATTCAACAAAAAGTCTTGATCATCTCGGTTTAGTTTCAGGCATGTGCAAAGATATTGGTATCGCCAAATTTATTGATGACGCACATCCCGAACAAAGT
AAAGATAAGCATGTTTCATACGGGCAACTCGTAGAAGCCATGATTTTAAATGGACTCGGTTTTGTTGGCAGAACATTGTATATGTATCCTGAATATTTTG
CAGATCGGCCTGTCGAACGCCTTCTTGGTAAGGGTGTAAAAGCGGAGCATATTAATGACGATGCACTCGGTCGCTGTCTTGACCAACTCTATGAAACTGG
CGTTTCTGATCTATTTCAAGGACTGTCCGCCCGTACAATTTCACATTTAAAGCTCCCATGTGAAGGACTTAATCTGGACTCCACAAGCATTCATGTTGAT
GGCGAGTATAAAGACGAAGACGGTAATACGGCCATTCAATTAGTGCGAGGCTACAGCCGTGACCATCGCCCTGAATTGAATCAGGTGGTGTTAAACCTGA
TCACTGAAAATCAAGCAGGCATCCCTGTCTACATGCAAGCTGCAAGTGGTAACATTAATGATAACGAAGGCTTTAAAAACATAATAAAACAACATGTTAA
AAGTCTTAAAGCCGCTTATCATAATCGTTACTTTATTGGTGATGCAGCCCTTTATACAATAGGATCAGTCCAATCATTTGATGAACAAAATGAATTGTTC
ATCTCCAGAGCGCCGCAAAAGTTAAATTTAGTCAAAGACGCAATATCAGAACAACACAATTACCTTTTTACTGAGCTAGGAAATGGTTATAGCGCAACTT
GGATAGATTCAAATTATGGCGGTGTAAAACAGCGTTGGTTATTGGTGTTCAGTGAACAGGCAAAAAAACGAGAACAGTACACGTTAGATAAACGTATGCT
AAAAGACTCAAACGCGGCATTAAAATCGTTGAAAAAGCTAAGTAAGGAGCGCTTTGCTTGCCATGCTGATGCAATGAAAATGCTGGGTATCTGGATGAAA
TCTCAAGCCAGCATGGTTCTAAGCGAAATTGAAGTTATTGAGCACCCAGTTTACCATAAAAGTGGGCGACCTAAGTCGGGTCAAGAACCTGATGATTATG
AATATCAAGTAATCGGTTTACTTGCTTCTAAATTGAATTATCGCGAACAGAAATTATCAGAAAAAGGGCTATTCATGTTAGCGACTAATGACTGTAGCGA
CACGTTAACCATGAGCAAAATGCTTGAGTTATATAAATCACAACAAAGTGTGGAGAAAGGATTTAGATTCTTAAAAAGTCCTGATTTTTTAACCTCATCA
TTATATCTCAAAAAGCCAGAGCGGATTGAAGCGCTGCTGATGATAATGACATGCTGCCTGATGGTATACGCGGCACTTGAGCATAAAATCCGAGAGGAGT
TAAAGGCTAAAGATGCTTATTTCCCCAATTTAAAATACAAACCATGTCAAAACCCGACTGCCCGTTGGGTCTTTTTCTGTTTTCAAGGGATCGATATTTT
AACTATCTCAGAAAATCGGCAGTTCGTGTTGAATATTGAAGAGCGAAATCGAATAATTATTGATTGTATGGGGCCAACATACCTGCAAATTTATTCATAA
AATGGGGTGCGGAATGTCGGG
TGAAATTGTAAAATCCCGCATGAAATAAAAAAAAGCTTGACGGCGATCCCCATATTTGATCTATTAGTTATCTTTGGGCGATGAAAATTATGACCATATC
ATATTCAACAAAAAGTCTTGATCATCTCGGTTTAGTTTCAGGCATGTGCAAAGATATTGGTATCGCCAAATTTATTGATGACGCACATCCCGAACAAAGT
AAAGATAAGCATGTTTCATACGGGCAACTCGTAGAAGCCATGATTTTAAATGGACTCGGTTTTGTTGGCAGAACATTGTATATGTATCCTGAATATTTTG
CAGATCGGCCTGTCGAACGCCTTCTTGGTAAGGGTGTAAAAGCGGAGCATATTAATGACGATGCACTCGGTCGCTGTCTTGACCAACTCTATGAAACTGG
CGTTTCTGATCTATTTCAAGGACTGTCCGCCCGTACAATTTCACATTTAAAGCTCCCATGTGAAGGACTTAATCTGGACTCCACAAGCATTCATGTTGAT
GGCGAGTATAAAGACGAAGACGGTAATACGGCCATTCAATTAGTGCGAGGCTACAGCCGTGACCATCGCCCTGAATTGAATCAGGTGGTGTTAAACCTGA
TCACTGAAAATCAAGCAGGCATCCCTGTCTACATGCAAGCTGCAAGTGGTAACATTAATGATAACGAAGGCTTTAAAAACATAATAAAACAACATGTTAA
AAGTCTTAAAGCCGCTTATCATAATCGTTACTTTATTGGTGATGCAGCCCTTTATACAATAGGATCAGTCCAATCATTTGATGAACAAAATGAATTGTTC
ATCTCCAGAGCGCCGCAAAAGTTAAATTTAGTCAAAGACGCAATATCAGAACAACACAATTACCTTTTTACTGAGCTAGGAAATGGTTATAGCGCAACTT
GGATAGATTCAAATTATGGCGGTGTAAAACAGCGTTGGTTATTGGTGTTCAGTGAACAGGCAAAAAAACGAGAACAGTACACGTTAGATAAACGTATGCT
AAAAGACTCAAACGCGGCATTAAAATCGTTGAAAAAGCTAAGTAAGGAGCGCTTTGCTTGCCATGCTGATGCAATGAAAATGCTGGGTATCTGGATGAAA
TCTCAAGCCAGCATGGTTCTAAGCGAAATTGAAGTTATTGAGCACCCAGTTTACCATAAAAGTGGGCGACCTAAGTCGGGTCAAGAACCTGATGATTATG
AATATCAAGTAATCGGTTTACTTGCTTCTAAATTGAATTATCGCGAACAGAAATTATCAGAAAAAGGGCTATTCATGTTAGCGACTAATGACTGTAGCGA
CACGTTAACCATGAGCAAAATGCTTGAGTTATATAAATCACAACAAAGTGTGGAGAAAGGATTTAGATTCTTAAAAAGTCCTGATTTTTTAACCTCATCA
TTATATCTCAAAAAGCCAGAGCGGATTGAAGCGCTGCTGATGATAATGACATGCTGCCTGATGGTATACGCGGCACTTGAGCATAAAATCCGAGAGGAGT
TAAAGGCTAAAGATGCTTATTTCCCCAATTTAAAATACAAACCATGTCAAAACCCGACTGCCCGTTGGGTCTTTTTCTGTTTTCAAGGGATCGATATTTT
AACTATCTCAGAAAATCGGCAGTTCGTGTTGAATATTGAAGAGCGAAATCGAATAATTATTGATTGTATGGGGCCAACATACCTGCAAATTTATTCATAA
AATGGGGTGCGGAATGTCGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1620 bp | 539 aa | 181 | 1800 | + | No |
Chemistry : DDE
ORF sequence :
MKIMTISYSTKSLDHLGLVSGMCKDIGIAKFIDDAHPEQSKDKHVSYGQLVEAMILNGLGFVGRTLYMYPEYFADRPVERLLGKGVKAEHINDDALGRCL
DQLYETGVSDLFQGLSARTISHLKLPCEGLNLDSTSIHVDGEYKDEDGNTAIQLVRGYSRDHRPELNQVVLNLITENQAGIPVYMQAASGNINDNEGFKN
IIKQHVKSLKAAYHNRYFIGDAALYTIGSVQSFDEQNELFISRAPQKLNLVKDAISEQHNYLFTELGNGYSATWIDSNYGGVKQRWLLVFSEQAKKREQY
TLDKRMLKDSNAALKSLKKLSKERFACHADAMKMLGIWMKSQASMVLSEIEVIEHPVYHKSGRPKSGQEPDDYEYQVIGLLASKLNYREQKLSEKGLFML
ATNDCSDTLTMSKMLELYKSQQSVEKGFRFLKSPDFLTSSLYLKKPERIEALLMIMTCCLMVYAALEHKIREELKAKDAYFPNLKYKPCQNPTARWVFFC
FQGIDILTISENRQFVLNIEERNRIIIDCMGPTYLQIYS
DQLYETGVSDLFQGLSARTISHLKLPCEGLNLDSTSIHVDGEYKDEDGNTAIQLVRGYSRDHRPELNQVVLNLITENQAGIPVYMQAASGNINDNEGFKN
IIKQHVKSLKAAYHNRYFIGDAALYTIGSVQSFDEQNELFISRAPQKLNLVKDAISEQHNYLFTELGNGYSATWIDSNYGGVKQRWLLVFSEQAKKREQY
TLDKRMLKDSNAALKSLKKLSKERFACHADAMKMLGIWMKSQASMVLSEIEVIEHPVYHKSGRPKSGQEPDDYEYQVIGLLASKLNYREQKLSEKGLFML
ATNDCSDTLTMSKMLELYKSQQSVEKGFRFLKSPDFLTSSLYLKKPERIEALLMIMTCCLMVYAALEHKIREELKAKDAYFPNLKYKPCQNPTARWVFFC
FQGIDILTISENRQFVLNIEERNRIIIDCMGPTYLQIYS
Blast result :Comments : NCBI-blast: 75% aa-identical to Psychromonas arctica (WP_028867284.1) ISfinder: 52% aa-identical to ISAs25_aa1 (i.e. family: IS1634 - Tnp)
Comments
ISVa17 is 69% aa similar to ISAs25.
ISVa17 and ISVvu1 split together an ISVa10-element.
ISVa17 and ISVvu1 split together an ISVa10-element.
References
1] Holm K.O. (2016) Direct submission
2) Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302
2) Busschaert P. et al (2014) Journal of Fish Diseases (doi:10.1111/jfd.12290)
3] VIB12 [in Austin B. et al (1995) Systematic and Applied Microbiology 18: 285-302